Variant report

Variant	rs73442536
Chromosome Location	chr15:72673492-72673493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72672853..72674425-chr15:72675478..72677681,2	K562	blood:
2	chr15:72673165..72676968-chr15:72765350..72768460,6	MCF-7	breast:
3	chr15:72672709..72674738-chr15:72742581..72744215,2	MCF-7	breast:
4	chr15:72637386..72639806-chr15:72671952..72673876,2	K562	blood:
5	chr15:72672866..72674648-chr15:72766879..72768997,2	MCF-7	breast:
6	chr15:72667788..72670263-chr15:72673288..72675129,2	MCF-7	breast:
7	chr15:72667201..72670488-chr15:72672607..72675873,3	K562	blood:
8	chr15:72672210..72674476-chr15:72789128..72791611,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000271072	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000260729	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16956866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956988	0.82[ASN][1000 genomes]
rs1972692	0.87[ASN][1000 genomes]
rs2912216	0.87[ASN][1000 genomes]
rs2912228	0.87[ASN][1000 genomes]
rs2959913	0.87[ASN][1000 genomes]
rs3743230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57155740	0.82[ASN][1000 genomes]
rs58110372	0.82[ASN][1000 genomes]
rs60106752	0.82[ASN][1000 genomes]
rs60207997	0.82[ASN][1000 genomes]
rs7174307	0.82[ASN][1000 genomes]
rs7175437	0.82[ASN][1000 genomes]
rs73442522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73442539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73442549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73442560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442591	0.82[ASN][1000 genomes]
rs73442595	0.82[ASN][1000 genomes]
rs73444703	0.82[ASN][1000 genomes]
rs73444714	0.82[ASN][1000 genomes]
rs73444720	0.82[ASN][1000 genomes]
rs73444723	0.82[ASN][1000 genomes]
rs73444736	0.82[ASN][1000 genomes]
rs73444755	0.82[ASN][1000 genomes]
rs73444759	0.82[ASN][1000 genomes]
rs73444761	0.82[ASN][1000 genomes]
rs73444773	0.82[ASN][1000 genomes]
rs73444774	0.82[ASN][1000 genomes]
rs73444791	0.82[ASN][1000 genomes]
rs73444794	0.82[ASN][1000 genomes]
rs73444798	0.82[ASN][1000 genomes]
rs73444802	0.82[ASN][1000 genomes]
rs73446604	0.82[ASN][1000 genomes]
rs8031264	0.87[ASN][1000 genomes]
rs8032276	0.87[ASN][1000 genomes]
rs8035007	0.82[ASN][1000 genomes]
rs962407	0.95[ASN][1000 genomes]
rs9972606	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv521971	chr15:72666424-72678738	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
7	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
8	nsv984090	chr15:72670090-72673769	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72669000-72673600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:72670000-72675200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:72672400-72673600	Enhancers	Adipose Nuclei	Adipose
4	chr15:72672400-72674600	Enhancers	HepG2	liver

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