Variant report

Variant	rs73443752
Chromosome Location	chr15:77053490-77053491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77052021..77055015-chr15:77055082..77056903,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56866829	0.87[AFR][1000 genomes]
rs59242281	1.00[AFR][1000 genomes]
rs59782694	0.87[AFR][1000 genomes]
rs59858088	1.00[AFR][1000 genomes]
rs73446219	0.87[AFR][1000 genomes]
rs73455126	0.87[AFR][1000 genomes]
rs73455146	0.87[AFR][1000 genomes]
rs73455153	0.87[AFR][1000 genomes]
rs73455162	0.87[AFR][1000 genomes]
rs73455170	0.87[AFR][1000 genomes]
rs73455385	1.00[AFR][1000 genomes]
rs73457048	0.87[AFR][1000 genomes]
rs73457057	0.87[AFR][1000 genomes]
rs73457073	0.87[AFR][1000 genomes]
rs73457079	0.87[AFR][1000 genomes]
rs73457154	1.00[AFR][1000 genomes]
rs73457168	1.00[AFR][1000 genomes]
rs73461319	1.00[AFR][1000 genomes]
rs73461327	1.00[AFR][1000 genomes]
rs73461329	1.00[AFR][1000 genomes]
rs73461332	1.00[AFR][1000 genomes]
rs73461338	1.00[AFR][1000 genomes]
rs73461343	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1043066	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv542441	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76989600-77055800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:76992400-77056200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:76992400-77056200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:76992800-77056000	Weak transcription	Right Ventricle	heart
5	chr15:76993200-77056200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:76994200-77056000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:77012800-77056200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:77016600-77056000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:77017600-77054400	Weak transcription	HSMMtube	muscle
10	chr15:77021000-77054200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:77021000-77055800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:77021000-77056000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:77023200-77056000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:77023400-77056000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:77023600-77056400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:77025200-77056400	Weak transcription	Hela-S3	cervix
17	chr15:77025400-77056400	Weak transcription	Esophagus	oesophagus
18	chr15:77025600-77054600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:77025600-77055400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:77025600-77056000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:77025600-77056400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:77025600-77056400	Weak transcription	Gastric	stomach
23	chr15:77025600-77056400	Weak transcription	Lung	lung
24	chr15:77025600-77056400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:77025800-77056000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:77025800-77056200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:77030200-77055400	Weak transcription	Fetal Kidney	kidney
28	chr15:77030800-77056400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:77031000-77056200	Weak transcription	Fetal Stomach	stomach
30	chr15:77031800-77056000	Weak transcription	Brain Substantia Nigra	brain
31	chr15:77032000-77054200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:77032400-77056400	Weak transcription	Left Ventricle	heart
33	chr15:77032600-77056000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:77034200-77056000	Weak transcription	Fetal Heart	heart
35	chr15:77034400-77056200	Weak transcription	Small Intestine	intestine
36	chr15:77036400-77055200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:77036400-77056200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:77036400-77056400	Weak transcription	Psoas Muscle	Psoas
39	chr15:77037600-77055600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:77039000-77056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:77039600-77054000	Weak transcription	Fetal Brain Male	brain
42	chr15:77039600-77055000	Weak transcription	Dnd41	blood
43	chr15:77039600-77055400	Weak transcription	Primary B cells from cord blood	blood
44	chr15:77040200-77055000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:77040200-77055200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:77040200-77056000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:77040200-77056200	Weak transcription	Brain Anterior Caudate	brain
48	chr15:77040200-77056400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:77040200-77056400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:77040200-77056400	Weak transcription	Aorta	Aorta

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