Variant report

Variant	rs73444263
Chromosome Location	chr6:55806584-55806585
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:40)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:40 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:55806494-55806876	IMR90	lung:	n/a	n/a
2	CTCF	chr6:55806440-55806590	HAc	cerebellar:	n/a	n/a
3	CTCF	chr6:55806542-55806864	MCF-7	breast:	n/a	n/a
4	CTCF	chr6:55806580-55806730	HVMF	connective:	n/a	n/a
5	RAD21	chr6:55806503-55806971	MCF-7	breast:	n/a	n/a
6	CTCF	chr6:55806506-55806880	IMR90	lung:	n/a	n/a
7	SMC3	chr6:55806422-55806859	Hela-S3	cervix:	n/a	n/a
8	RAD21	chr6:55806551-55806834	HepG2	liver:	n/a	n/a
9	CTCF	chr6:55806520-55806670	GM06990	blood:	n/a	n/a
10	RAD21	chr6:55806447-55806968	A549	lung:	n/a	n/a
11	CTCF	chr6:55806580-55806730	HBMEC	blood vessel:	n/a	n/a
12	CTCF	chr6:55806503-55806923	HCT-116	colon:	n/a	n/a
13	CTCF	chr6:55806493-55806790	A549	lung:	n/a	n/a
14	RAD21	chr6:55806275-55806995	SK-N-SH	brain:	n/a	n/a
15	RAD21	chr6:55806446-55806769	HepG2	liver:	n/a	n/a
16	RAD21	chr6:55806458-55806854	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr6:55806338-55806980	A549	lung:	n/a	n/a
18	CTCF	chr6:55806538-55806867	GM12878	blood:	n/a	n/a
19	CTCF	chr6:55806560-55806710	HVMF	connective:	n/a	n/a
20	RAD21	chr6:55806494-55806876	MCF-7	breast:	n/a	n/a
21	RAD21	chr6:55806570-55806891	SK-N-SH_RA	brain:	n/a	n/a
22	RAD21	chr6:55806470-55806839	H1-hESC	embryonic stem cell:	n/a	n/a
23	RAD21	chr6:55806497-55806872	HCT-116	colon:	n/a	n/a
24	RAD21	chr6:55806384-55806923	A549	lung:	n/a	n/a
25	RAD21	chr6:55806401-55806945	HCT-116	colon:	n/a	n/a
26	CTCF	chr6:55806560-55806710	BJ	skin:	n/a	n/a
27	CTCF	chr6:55806540-55806690	HCT-116	colon:	n/a	n/a
28	CTCF	chr6:55806520-55806670	HMEC	breast:	n/a	n/a
29	CTCF	chr6:55806534-55806861	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr6:55806580-55806730	Caco-2	colon:	n/a	n/a
31	CTCF	chr6:55806500-55806650	RPTEC	kidney:	n/a	n/a
32	RAD21	chr6:55806407-55806881	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr6:55806553-55806815	A549	lung:	n/a	n/a
34	CTCF	chr6:55806580-55806730	BE2_C	brain:	n/a	n/a
35	CTCF	chr6:55806468-55806827	MCF-7	breast:	n/a	n/a
36	RAD21	chr6:55806522-55806821	SK-N-SH_RA	brain:	n/a	n/a
37	RAD21	chr6:55806520-55806864	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr6:55806580-55806730	HAc	cerebellar:	n/a	n/a
39	RAD21	chr6:55806470-55806907	ECC-1	luminal epithelium:	n/a	n/a
40	CTCF	chr6:55806500-55806650	GM12865	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55310627..55311224-chr6:55806307..55806968,2	MCF-7	breast:
2	chr6:55313873..55314721-chr6:55806208..55806737,2	MCF-7	breast:

No data

Variant related genes	Relation type
NPM1P36	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11965332	1.00[EUR][1000 genomes]
rs35338969	1.00[EUR][1000 genomes]
rs57942055	1.00[EUR][1000 genomes]
rs59302865	1.00[EUR][1000 genomes]
rs6459121	1.00[EUR][1000 genomes]
rs6902463	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6922937	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6925547	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6938871	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73442195	1.00[EUR][1000 genomes]
rs73444285	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73446214	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73455141	1.00[EUR][1000 genomes]
rs73457035	1.00[EUR][1000 genomes]
rs7453182	1.00[EUR][1000 genomes]
rs9464312	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464313	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9464314	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9475483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475484	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9885849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links