Variant report

Variant	rs73444280
Chromosome Location	chr6:55815486-55815487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55646148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55789019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55795426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55870017	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56051525	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56680053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58430677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58821824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61497771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444291	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444300	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446213	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73455127	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55814200-55815600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:55814600-55815600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:55814800-55815600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:55814800-55815600	ZNF genes & repeats	Placenta	Placenta
5	chr6:55815000-55815600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:55815200-55815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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