Variant report

Variant	rs73448670
Chromosome Location	chr9:72803591-72803592
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:41465184..41465702-chr9:72803544..72804058,2	Hela-S3	cervix:
2	chr11:62608653..62609533-chr9:72803108..72804122,3	NB4	blood:

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs35534839	1.00[AMR][1000 genomes]
rs58615277	1.00[AMR][1000 genomes]
rs59725916	1.00[AMR][1000 genomes]
rs60072761	1.00[AMR][1000 genomes]
rs60551452	1.00[AMR][1000 genomes]
rs73446762	1.00[AMR][1000 genomes]
rs73446764	1.00[AMR][1000 genomes]
rs73446777	1.00[AMR][1000 genomes]
rs73446778	1.00[AMR][1000 genomes]
rs73446779	1.00[AMR][1000 genomes]
rs73446793	1.00[AMR][1000 genomes]
rs73448646	1.00[AMR][1000 genomes]
rs73448651	1.00[AMR][1000 genomes]
rs73448660	1.00[AMR][1000 genomes]
rs73448663	1.00[AMR][1000 genomes]
rs73448904	1.00[AMR][1000 genomes]
rs73449496	1.00[AMR][1000 genomes]
rs73451455	1.00[AMR][1000 genomes]
rs73452732	1.00[AMR][1000 genomes]
rs73452740	1.00[AMR][1000 genomes]
rs73452742	1.00[AMR][1000 genomes]
rs73452745	1.00[AMR][1000 genomes]
rs73452756	1.00[AMR][1000 genomes]
rs73454766	1.00[AMR][1000 genomes]
rs73454769	1.00[AMR][1000 genomes]
rs73456610	1.00[AMR][1000 genomes]
rs73456638	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72780600-72803600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:72793200-72804800	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:72794000-72806800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:72800200-72803800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:72800800-72803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:72800800-72807800	Weak transcription	Left Ventricle	heart
8	chr9:72800800-72811600	Weak transcription	Esophagus	oesophagus
9	chr9:72801000-72805800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:72801000-72810200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:72801600-72803600	Strong transcription	HSMM	muscle
12	chr9:72802000-72805000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:72802000-72806600	Weak transcription	HSMMtube	muscle
14	chr9:72802000-72808200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72802000-72809000	Weak transcription	Ovary	ovary
16	chr9:72802000-72811000	Weak transcription	Pancreas	Pancrea
17	chr9:72802000-72827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:72802200-72804200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:72802200-72820000	Weak transcription	Fetal Lung	lung
20	chr9:72803200-72807800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:72803400-72810800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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