Variant report

Variant	rs73448977
Chromosome Location	chr6:56199660-56199661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:56199487-56201096	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr6:56199609-56200375	U87	brain:	n/a	n/a
3	JUND	chr6:56199576-56200280	SK-N-SH	brain:	n/a	n/a
4	MAX	chr6:56199632-56200160	SK-N-SH	brain:	n/a	chr6:56199912-56199921
5	RXRA	chr6:56199646-56200200	SK-N-SH	brain:	n/a	chr6:56199923-56199932
6	NFIC	chr6:56199612-56200206	SK-N-SH	brain:	n/a	chr6:56199846-56199863
7	POLR2A	chr6:56199603-56200380	U87	brain:	n/a	n/a
8	TCF12	chr6:56199584-56201124	SK-N-SH	brain:	n/a	n/a
9	MEF2A	chr6:56199653-56200970	SK-N-SH	brain:	n/a	n/a
10	PBX3	chr6:56199560-56200419	SK-N-SH	brain:	n/a	n/a
11	MAX	chr6:56199562-56200119	SK-N-SH	brain:	n/a	chr6:56199912-56199921
12	EP300	chr6:56199535-56200359	SK-N-SH	brain:	n/a	chr6:56199909-56199923
13	FOSL2	chr6:56199608-56200246	SK-N-SH	brain:	n/a	n/a
14	TCF12	chr6:56199513-56201131	SK-N-SH	brain:	n/a	n/a
15	GATA3	chr6:56199530-56201131	SK-N-SH	brain:	n/a	n/a
16	NFIC	chr6:56199493-56200330	SK-N-SH	brain:	n/a	chr6:56199846-56199863
17	JUND	chr6:56199582-56200252	SK-N-SH	brain:	n/a	n/a
18	YY1	chr6:56199651-56200078	SK-N-SH	brain:	n/a	n/a
19	GATA2	chr6:56199558-56200972	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000227602	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10733186	1.00[AMR][1000 genomes]
rs10755782	1.00[AMR][1000 genomes]
rs10755783	1.00[AMR][1000 genomes]
rs10807514	1.00[AMR][1000 genomes]
rs10948998	1.00[AMR][1000 genomes]
rs4266497	1.00[AMR][1000 genomes]
rs4282413	1.00[AMR][1000 genomes]
rs4288206	1.00[AMR][1000 genomes]
rs4348307	1.00[AMR][1000 genomes]
rs4374815	1.00[AMR][1000 genomes]
rs4385303	1.00[AMR][1000 genomes]
rs4388289	1.00[AMR][1000 genomes]
rs4626424	1.00[AMR][1000 genomes]
rs5002552	1.00[AMR][1000 genomes]
rs6910756	1.00[AMR][1000 genomes]
rs6915844	1.00[AMR][1000 genomes]
rs6933632	1.00[AMR][1000 genomes]
rs73747783	1.00[AMR][1000 genomes]
rs7775020	1.00[AMR][1000 genomes]
rs7775317	1.00[AMR][1000 genomes]
rs7775403	1.00[AMR][1000 genomes]
rs9475673	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56194400-56203600	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:56194600-56200000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:56194800-56200200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:56195000-56200000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:56198800-56200200	Enhancers	Hela-S3	cervix
6	chr6:56199000-56200000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:56199000-56201400	Enhancers	NHDF-Ad	bronchial
8	chr6:56199000-56201400	Enhancers	NHEK	skin
9	chr6:56199000-56201800	Enhancers	HMEC	breast
10	chr6:56199200-56201000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:56199200-56201000	Enhancers	Osteobl	bone
12	chr6:56199200-56201400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:56199200-56201400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:56199400-56200800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:56199400-56200800	Enhancers	HSMM	muscle
16	chr6:56199400-56201000	Enhancers	HUVEC	blood vessel
17	chr6:56199400-56201000	Enhancers	NHLF	lung
18	chr6:56199400-56201200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:56199400-56201800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:56199600-56200200	Enhancers	NH-A	brain
21	chr6:56199600-56201200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:56199600-56202400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links