Variant report

Variant	rs73449083
Chromosome Location	chr7:126355180-126355181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126354910..126358134-chr7:126363262..126365444,3	K562	blood:
2	7:126085913-126088095..7:126352172-126357573	GM12878	blood:
3	chr7:126354910..126357333-chr7:126363262..126365444,2	K562	blood:
4	chr7:126341125..126342675-chr7:126352526..126355240,2	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10238240	1.00[EUR][1000 genomes]
rs10240132	1.00[EUR][1000 genomes]
rs10240197	1.00[EUR][1000 genomes]
rs10243157	1.00[EUR][1000 genomes]
rs10246394	1.00[EUR][1000 genomes]
rs10248626	1.00[EUR][1000 genomes]
rs10249124	1.00[EUR][1000 genomes]
rs10251940	1.00[EUR][1000 genomes]
rs10252394	1.00[EUR][1000 genomes]
rs10255827	1.00[EUR][1000 genomes]
rs10257312	1.00[EUR][1000 genomes]
rs10267858	1.00[EUR][1000 genomes]
rs10269745	1.00[EUR][1000 genomes]
rs10279556	1.00[EUR][1000 genomes]
rs10281032	1.00[EUR][1000 genomes]
rs10281430	1.00[EUR][1000 genomes]
rs1419509	1.00[EUR][1000 genomes]
rs2106191	1.00[EUR][1000 genomes]
rs2237770	1.00[AMR][1000 genomes]
rs2283077	1.00[AMR][1000 genomes]
rs2283078	1.00[AMR][1000 genomes]
rs2283081	1.00[AMR][1000 genomes]
rs28513428	1.00[EUR][1000 genomes]
rs28536013	1.00[EUR][1000 genomes]
rs58768465	1.00[AMR][1000 genomes]
rs59800028	1.00[EUR][1000 genomes]
rs59966379	1.00[AMR][1000 genomes]
rs60356312	1.00[AMR][1000 genomes]
rs60739229	1.00[AMR][1000 genomes]
rs61141784	1.00[AMR][1000 genomes]
rs61207606	1.00[EUR][1000 genomes]
rs61755405	1.00[EUR][1000 genomes]
rs61758766	1.00[AMR][1000 genomes]
rs61758827	1.00[AMR][1000 genomes]
rs6944201	1.00[AMR][1000 genomes]
rs6946530	1.00[EUR][1000 genomes]
rs73447033	1.00[AMR][1000 genomes]
rs73449023	1.00[AMR][1000 genomes]
rs73449067	1.00[EUR][1000 genomes]
rs73449077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73449091	1.00[AMR][1000 genomes]
rs73449094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73449095	1.00[EUR][1000 genomes]
rs73449097	1.00[AMR][1000 genomes]
rs73449223	1.00[AMR][1000 genomes]
rs73449233	1.00[AMR][1000 genomes]
rs73449235	1.00[AMR][1000 genomes]
rs73449236	1.00[AMR][1000 genomes]
rs73449239	1.00[AMR][1000 genomes]
rs73449240	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv971569	chr7:126354720-126359366	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126342000-126367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:126355000-126355600	Enhancers	HSMM	muscle

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