Variant report

Variant	rs73449618
Chromosome Location	chr6:64290237-64290238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64288009..64290421-chr6:64344795..64347060,2	MCF-7	breast:
2	chr6:64289729..64291970-chr6:64293483..64297039,3	MCF-7	breast:
3	chr6:64289813..64292111-chr6:64473996..64476108,2	K562	blood:
4	chr6:64288992..64292789-chr6:64292911..64296386,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34196474	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091181	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439221	1.00[AMR][1000 genomes]
rs73439253	1.00[AMR][1000 genomes]
rs73441048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449632	1.00[AMR][1000 genomes]
rs73451349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965740	chr6:64290024-64291302	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64284000-64294000	Weak transcription	Spleen	Spleen
2	chr6:64284000-64297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:64284200-64294200	Weak transcription	Gastric	stomach
4	chr6:64284200-64294400	Weak transcription	Lung	lung
5	chr6:64284400-64292600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:64284400-64294400	Weak transcription	Aorta	Aorta
7	chr6:64284400-64296200	Weak transcription	Ovary	ovary
8	chr6:64284600-64292000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:64284600-64294800	Weak transcription	Right Ventricle	heart
10	chr6:64284800-64307600	Weak transcription	Fetal Stomach	stomach
11	chr6:64285000-64294800	Weak transcription	Stomach Mucosa	stomach
12	chr6:64285400-64293600	Weak transcription	Fetal Heart	heart
13	chr6:64285400-64294600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:64285600-64291600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:64285600-64292800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:64285600-64295800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:64285800-64293000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:64286000-64292800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:64286200-64290400	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr6:64286200-64290600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:64286200-64290600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:64286200-64290600	Strong transcription	K562	blood
23	chr6:64286200-64290800	Strong transcription	Primary hematopoietic stem cells	blood
24	chr6:64286200-64291400	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr6:64286200-64291400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:64286200-64291800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:64286200-64292200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:64286200-64292800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:64286200-64292800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:64286200-64292800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:64286200-64292800	Strong transcription	HUVEC	blood vessel
32	chr6:64286200-64293000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:64286200-64293000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:64286200-64293000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:64286200-64293000	Strong transcription	Fetal Thymus	thymus
36	chr6:64286200-64293800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:64286200-64294000	Strong transcription	Primary B cells from cord blood	blood
38	chr6:64286200-64294000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:64286200-64294400	Strong transcription	HSMM	muscle
40	chr6:64286400-64290400	Strong transcription	Fetal Lung	lung
41	chr6:64286400-64291000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:64286400-64291000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:64286400-64291200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:64286400-64291200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:64286400-64291400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:64286400-64291600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:64286400-64291800	Strong transcription	NHDF-Ad	bronchial
48	chr6:64286400-64293000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:64286400-64293000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:64286400-64293000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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