Variant report

Variant	rs73449632
Chromosome Location	chr6:64307767-64307768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:64307384..64309473-chr6:64334583..64337195,2	K562	blood:
2	chr6:64306565..64309753-chr6:64343946..64347831,5	K562	blood:
3	chr6:64299036..64303200-chr6:64306803..64309022,3	K562	blood:
4	chr6:64283629..64285650-chr6:64307693..64310407,3	MCF-7	breast:
5	chr6:64303581..64305440-chr6:64306107..64308882,2	K562	blood:
6	chr6:64281379..64284706-chr6:64307594..64310683,4	K562	blood:
7	chr6:64281185..64283596-chr6:64306187..64309666,3	MCF-7	breast:
8	chr6:64307189..64310027-chr6:64312721..64315208,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

rs_ID	r²[population]
rs34196474	1.00[AMR][1000 genomes]
rs59091181	1.00[AMR][1000 genomes]
rs73439221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73441048	1.00[AMR][1000 genomes]
rs73449618	1.00[AMR][1000 genomes]
rs73451349	1.00[AMR][1000 genomes]

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64291400-64307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:64302800-64307800	Weak transcription	Fetal Brain Male	brain
3	chr6:64306400-64307800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:64307400-64308000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:64307600-64307800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:64307600-64307800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:64307600-64307800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:64307600-64307800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:64307600-64307800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:64307600-64307800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:64307600-64307800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:64307600-64307800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:64307600-64307800	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:64307600-64307800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:64307600-64307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:64307600-64307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:64307600-64307800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:64307600-64307800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:64307600-64307800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:64307600-64307800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:64307600-64307800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:64307600-64307800	Enhancers	Liver	Liver
23	chr6:64307600-64307800	Enhancers	Brain Angular Gyrus	brain
24	chr6:64307600-64307800	Active TSS	Brain Germinal Matrix	brain
25	chr6:64307600-64307800	Enhancers	Brain Hippocampus Middle	brain
26	chr6:64307600-64307800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr6:64307600-64307800	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr6:64307600-64307800	Enhancers	Colon Smooth Muscle	Colon
29	chr6:64307600-64307800	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:64307600-64307800	Enhancers	Fetal Stomach	stomach
31	chr6:64307600-64307800	Enhancers	Ovary	ovary
32	chr6:64307600-64307800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:64307600-64307800	Flanking Active TSS	A549	lung
34	chr6:64307600-64307800	Enhancers	GM12878-XiMat	blood
35	chr6:64307600-64307800	Flanking Active TSS	HepG2	liver
36	chr6:64307600-64307800	Enhancers	HMEC	breast
37	chr6:64307600-64307800	Enhancers	NH-A	brain
38	chr6:64307600-64307800	Enhancers	NHEK	skin
39	chr6:64307600-64307800	Enhancers	Osteobl	bone
40	chr6:64307600-64308000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr6:64307600-64308000	Flanking Active TSS	Fetal Brain Female	brain
42	chr6:64307600-64308000	Enhancers	Placenta Amnion	Placenta Amnion
43	chr6:64307600-64308000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr6:64307600-64308200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:64307600-64308600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr6:64307600-64308600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:64307600-64309000	Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr6:64307600-64309000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:64307600-64309000	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr6:64307600-64309200	Active TSS	HUES64 Cell Line	embryonic stem cell

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