Variant report

Variant	rs73451349
Chromosome Location	chr6:64513401-64513402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34196474	1.00[AMR][1000 genomes]
rs59091181	1.00[AMR][1000 genomes]
rs73439221	1.00[AMR][1000 genomes]
rs73439253	1.00[AMR][1000 genomes]
rs73441048	1.00[AMR][1000 genomes]
rs73449618	1.00[AMR][1000 genomes]
rs73449632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64485200-64514400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64497000-64514400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:64506200-64514400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:64509800-64514600	Weak transcription	Stomach Mucosa	stomach
5	chr6:64510000-64514200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:64511000-64514400	Weak transcription	Liver	Liver
7	chr6:64512800-64514400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:64512800-64514400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:64512800-64514600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:64512800-64515000	Enhancers	NHDF-Ad	bronchial
11	chr6:64513000-64514000	Weak transcription	Hela-S3	cervix
12	chr6:64513000-64514400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:64513000-64514400	Weak transcription	Fetal Intestine Large	intestine
14	chr6:64513000-64517400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:64513200-64514200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:64513200-64514400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:64513200-64514400	Weak transcription	Brain Substantia Nigra	brain
18	chr6:64513400-64516600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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