Variant report
| Variant | rs73453048 |
|---|---|
| Chromosome Location | chr7:145499409-145499410 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:145499268..145500796-chr7:145500851..145503015,2 | K562 | blood: | |
| 2 | chr7:145476367..145479131-chr7:145497414..145500253,2 | K562 | blood: | |
| 3 | chr7:145498670..145501761-chr7:145504907..145507918,3 | K562 | blood: | |
| 4 | chr7:145480904..145484102-chr7:145498283..145500839,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12113978 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61472949 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6978041 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73453045 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73453063 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73456924 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73457001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73458856 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73463786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73467320 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9918572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754040 | chr7:145303352-145698352 | Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2755386 | chr7:145303352-145698352 | Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv889383 | chr7:145396141-145549570 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv831182 | chr7:145399806-145556489 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1019118 | chr7:145483353-145639795 | Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv2102367 | chr7:145499022-145499449 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:145495400-145511400 | Weak transcription | K562 | blood |
