Variant report

Variant	rs73453051
Chromosome Location	chr11:47788405-47788406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47573074..47575755-chr11:47786492..47788790,2	MCF-7	breast:
2	chr11:47662615..47664358-chr11:47788211..47790386,2	K562	blood:
3	chr11:47766940..47769464-chr11:47787267..47790011,2	MCF-7	breast:
4	chr11:47788188..47788884-chr17:2296550..2297348,2	Hela-S3	cervix:
5	chr11:47663509..47666496-chr11:47787150..47790595,4	MCF-7	breast:
6	chr11:47777903..47779990-chr11:47786996..47788801,2	K562	blood:
7	chr11:47788131..47789044-chr2:103353083..103353595,2	NB4	blood:
8	chr11:47573610..47575378-chr11:47787922..47789822,2	MCF-7	breast:
9	chr11:47787149..47790720-chr11:47868235..47871590,6	MCF-7	breast:
10	chr11:47787985..47790114-chr11:47808170..47811133,3	MCF-7	breast:
11	chr11:47662615..47665881-chr11:47786940..47791485,8	K562	blood:
12	chr11:47733919..47739426-chr11:47787626..47790588,5	MCF-7	breast:
13	chr11:47788308..47788926-chr9:102581895..102582530,2	Hela-S3	cervix:
14	chr11:47788029..47790788-chr11:47839875..47842622,2	MCF-7	breast:
15	chr11:47788106..47790225-chr11:47868385..47869954,2	K562	blood:
16	chr11:47787574..47789609-chr11:47817682..47819255,2	MCF-7	breast:
17	chr11:47785484..47788577-chr11:47791661..47794757,3	K562	blood:
18	chr11:47745878..47748144-chr11:47788174..47790668,2	MCF-7	breast:
19	chr11:47293111..47295014-chr11:47788351..47790710,2	MCF-7	breast:
20	chr11:47787394..47789838-chr11:47868299..47871448,5	MCF-7	breast:
21	chr11:47429560..47431457-chr11:47788267..47789854,2	MCF-7	breast:
22	chr11:47603018..47605507-chr11:47787325..47789892,2	K562	blood:
23	chr11:47788311..47789286-chr12:120730312..120731196,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000070444	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000170417	Chromatin interaction
ENSG00000135953	Chromatin interaction
ENSG00000109919	Chromatin interaction
ENSG00000110514	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000271543	Chromatin interaction
ENSG00000237461	Chromatin interaction
ENSG00000256746	Chromatin interaction
ENSG00000255197	Chromatin interaction
ENSG00000030066	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000165923	Chromatin interaction
ENSG00000252874	Chromatin interaction
ENSG00000165915	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1807195	1.00[AMR][1000 genomes]
rs57639610	1.00[AMR][1000 genomes]
rs58448918	1.00[AMR][1000 genomes]
rs60139548	1.00[AMR][1000 genomes]
rs60637944	1.00[AMR][1000 genomes]
rs61268975	1.00[AMR][1000 genomes]
rs61280057	1.00[AMR][1000 genomes]
rs61380628	1.00[AMR][1000 genomes]
rs73460984	1.00[AMR][1000 genomes]
rs73460994	1.00[AMR][1000 genomes]
rs73461000	1.00[AMR][1000 genomes]
rs73462805	1.00[AMR][1000 genomes]
rs73462855	1.00[AMR][1000 genomes]
rs73462867	1.00[AMR][1000 genomes]
rs73462901	1.00[AMR][1000 genomes]
rs73467321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47786400-47790200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:47786600-47789800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:47786600-47790000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr11:47786600-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:47786600-47790000	Active TSS	Fetal Kidney	kidney
6	chr11:47786600-47790000	Active TSS	GM12878-XiMat	blood
7	chr11:47786800-47789400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:47786800-47789600	Active TSS	Duodenum Mucosa	Duodenum
9	chr11:47786800-47789600	Active TSS	Stomach Smooth Muscle	stomach
10	chr11:47786800-47789800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:47786800-47789800	Active TSS	A549	lung
12	chr11:47786800-47789800	Active TSS	K562	blood
13	chr11:47786800-47790000	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr11:47786800-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:47786800-47790000	Active TSS	Brain Germinal Matrix	brain
16	chr11:47786800-47790200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr11:47786800-47790200	Active TSS	Right Atrium	heart
18	chr11:47786800-47790400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:47787000-47789200	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr11:47787000-47789200	Active TSS	Muscle Satellite Cultured Cells	--
21	chr11:47787000-47789400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:47787000-47789400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr11:47787000-47789400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:47787000-47789400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:47787000-47789400	Active TSS	HSMMtube	muscle
26	chr11:47787000-47789400	Active TSS	NH-A	brain
27	chr11:47787000-47789400	Active TSS	NHDF-Ad	bronchial
28	chr11:47787000-47789400	Active TSS	NHLF	lung
29	chr11:47787000-47789600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:47787000-47789600	Active TSS	Hela-S3	cervix
31	chr11:47787000-47789600	Active TSS	HMEC	breast
32	chr11:47787000-47789600	Active TSS	Osteobl	bone
33	chr11:47787000-47789800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:47787000-47789800	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr11:47787000-47790000	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr11:47787000-47790000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:47787000-47790000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:47787000-47790200	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr11:47787000-47790400	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr11:47787000-47790400	Active TSS	HSMM	muscle
41	chr11:47787200-47788600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:47787200-47789000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:47787200-47789400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:47787200-47789400	Active TSS	Rectal Smooth Muscle	rectum
45	chr11:47787200-47789800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:47787200-47789800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:47787200-47790000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:47787200-47790000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:47787200-47790000	Active TSS	Left Ventricle	heart
50	chr11:47787200-47790200	Active TSS	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links