Variant report

Variant	rs73453330
Chromosome Location	chr15:76565412-76565413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60191419	1.00[AFR][1000 genomes]
rs61293317	1.00[AFR][1000 genomes]
rs73446495	1.00[AFR][1000 genomes]
rs73446502	1.00[AFR][1000 genomes]
rs73448410	1.00[AFR][1000 genomes]
rs73451273	1.00[AFR][1000 genomes]
rs73451284	1.00[AFR][1000 genomes]
rs73451298	0.86[AFR][1000 genomes]
rs73453309	1.00[AFR][1000 genomes]
rs8037656	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76550600-76578400	Strong transcription	Liver	Liver
2	chr15:76555800-76567200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:76555800-76574200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr15:76555800-76578800	Weak transcription	Psoas Muscle	Psoas
5	chr15:76555800-76579000	Weak transcription	NHLF	lung
6	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
7	chr15:76556200-76569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:76556400-76581400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
10	chr15:76557000-76567200	Strong transcription	Hela-S3	cervix
11	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:76557600-76573400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
14	chr15:76558400-76568200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:76559600-76566600	Weak transcription	HUVEC	blood vessel
16	chr15:76560000-76582400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:76560200-76565600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:76560200-76566000	Strong transcription	Fetal Stomach	stomach
19	chr15:76560200-76578600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:76560600-76565800	Strong transcription	Osteobl	bone
21	chr15:76560600-76567000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:76560600-76567600	Strong transcription	A549	lung
23	chr15:76561000-76566600	Weak transcription	Gastric	stomach
24	chr15:76561000-76567600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:76561000-76567600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr15:76561000-76567600	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:76561000-76569400	Weak transcription	Spleen	Spleen
28	chr15:76561000-76570400	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:76561000-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:76561000-76574800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr15:76561000-76576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:76561000-76580400	Strong transcription	Adipose Nuclei	Adipose
33	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:76561200-76566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:76561200-76567800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:76561200-76578400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:76561400-76570200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:76561400-76578800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr15:76561600-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:76562000-76573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
42	chr15:76562400-76566800	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:76562600-76567000	Strong transcription	Fetal Lung	lung
44	chr15:76562600-76569400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:76562600-76574600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
47	chr15:76562800-76566200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr15:76562800-76567000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:76562800-76569200	Weak transcription	Lung	lung
50	chr15:76562800-76571600	Weak transcription	Colonic Mucosa	Colon

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