Variant report

Variant	rs73453879
Chromosome Location	chr9:73399589-73399590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2001378	1.00[AMR][1000 genomes]
rs2001379	1.00[AMR][1000 genomes]
rs60810117	1.00[AMR][1000 genomes]
rs7021166	1.00[AMR][1000 genomes]
rs73649176	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73390600-73399600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:73392000-73404600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73396400-73400800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:73396800-73417800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:73397600-73400000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:73397800-73404200	Weak transcription	Fetal Kidney	kidney
7	chr9:73399000-73400400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:73399000-73410400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:73399200-73400400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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