Variant report

Variant	rs73455146
Chromosome Location	chr15:76846910-76846911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56866829	1.00[AFR][1000 genomes]
rs57026560	0.87[AFR][1000 genomes]
rs57931886	0.87[AFR][1000 genomes]
rs58060544	1.00[AFR][1000 genomes]
rs58388611	1.00[AFR][1000 genomes]
rs59782694	1.00[AFR][1000 genomes]
rs60794367	0.87[AFR][1000 genomes]
rs7170187	0.87[AFR][1000 genomes]
rs7174377	0.87[AFR][1000 genomes]
rs7175175	0.87[AFR][1000 genomes]
rs73442144	1.00[AFR][1000 genomes]
rs73443752	0.87[AFR][1000 genomes]
rs73444270	0.87[AFR][1000 genomes]
rs73444271	0.87[AFR][1000 genomes]
rs73444275	0.87[AFR][1000 genomes]
rs73444284	1.00[AFR][1000 genomes]
rs73444286	1.00[AFR][1000 genomes]
rs73444294	1.00[AFR][1000 genomes]
rs73444302	1.00[AFR][1000 genomes]
rs73446211	1.00[AFR][1000 genomes]
rs73446219	1.00[AFR][1000 genomes]
rs73448115	0.87[AFR][1000 genomes]
rs73450219	0.87[AFR][1000 genomes]
rs73450231	0.87[AFR][1000 genomes]
rs73450235	1.00[AFR][1000 genomes]
rs73450238	1.00[AFR][1000 genomes]
rs73450253	0.87[AFR][1000 genomes]
rs73455126	1.00[AFR][1000 genomes]
rs73455153	1.00[AFR][1000 genomes]
rs73455162	1.00[AFR][1000 genomes]
rs73455170	1.00[AFR][1000 genomes]
rs73457040	0.87[AFR][1000 genomes]
rs73457048	1.00[AFR][1000 genomes]
rs73461319	0.87[AFR][1000 genomes]
rs73461327	0.87[AFR][1000 genomes]
rs73461329	0.87[AFR][1000 genomes]
rs73461332	0.87[AFR][1000 genomes]
rs73461338	0.87[AFR][1000 genomes]
rs73461343	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042514	chr15:76838221-76906382	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76843000-76853400	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:76843800-76850600	Weak transcription	Primary B cells from cord blood	blood
3	chr15:76845400-76847000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:76845600-76847200	Enhancers	Dnd41	blood
5	chr15:76845800-76847000	Enhancers	Primary T cells from cord blood	blood
6	chr15:76845800-76847800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr15:76845800-76851400	Weak transcription	Right Ventricle	heart
8	chr15:76846000-76862800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:76846000-76869000	Weak transcription	Left Ventricle	heart
10	chr15:76846000-76869000	Weak transcription	Pancreas	Pancrea
11	chr15:76846200-76850600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:76846200-76868800	Weak transcription	Fetal Intestine Small	intestine
13	chr15:76846600-76850800	Weak transcription	Fetal Lung	lung
14	chr15:76846800-76847000	Enhancers	Primary T helper cells fromperipheralblood	blood

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