Variant report

rSNPs within LD-proxies of this variant (count:6)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55933200-55961000	Weak transcription	Placenta	Placenta
3	chr6:55954800-55960400	Weak transcription	Fetal Kidney	kidney
4	chr6:55956400-55960200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:55956600-55961200	Weak transcription	HUVEC	blood vessel
6	chr6:55956600-55961400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:55956600-55965800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:55956600-55978400	Weak transcription	Aorta	Aorta
9	chr6:55956800-55957800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:55956800-55958000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:55956800-55958200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:55956800-55965600	Weak transcription	NHLF	lung
13	chr6:55957000-55958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:55957600-55957800	ZNF genes & repeats	Left Ventricle	heart
15	chr6:55957600-55958000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr6:55957600-55958000	ZNF genes & repeats	Fetal Lung	lung
17	chr6:55957600-55958000	ZNF genes & repeats	HSMM	muscle
18	chr6:55957600-55958200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:55957600-55958200	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:55957600-55959200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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