Variant report

Variant	rs73458820
Chromosome Location	chr7:145569719-145569720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10246643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250572	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253219	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270239	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28406497	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28601775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59843863	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6976897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7782094	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7782667	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145566000-145583800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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