Variant report

Variant	rs73458850
Chromosome Location	chr11:47907582-47907583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs56904157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56962998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57086723	1.00[EUR][1000 genomes]
rs57175250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57639610	1.00[AFR][1000 genomes]
rs57715874	1.00[AFR][1000 genomes]
rs58448918	1.00[AFR][1000 genomes]
rs58556689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59055358	1.00[AMR][1000 genomes]
rs60354180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60637944	1.00[AFR][1000 genomes]
rs60974919	0.81[AFR][1000 genomes]
rs61144745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61268975	1.00[AFR][1000 genomes]
rs61280057	1.00[AFR][1000 genomes]
rs61380628	1.00[AFR][1000 genomes]
rs61638533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61654484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73451032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73451054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73453047	1.00[AMR][1000 genomes]
rs73453068	1.00[AMR][1000 genomes]
rs73456963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73456966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73456971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73456978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73456993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73458857	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73460994	1.00[AFR][1000 genomes]
rs73462855	1.00[AFR][1000 genomes]
rs73462867	1.00[AFR][1000 genomes]
rs73462901	0.93[AFR][1000 genomes]
rs73464810	0.93[AFR][1000 genomes]
rs73465695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73465700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1049835	chr11:47837089-47928822	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv541036	chr11:47837089-47928822	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47903200-47913400	Weak transcription	Hela-S3	cervix
2	chr11:47905400-47908600	Enhancers	Placenta	Placenta
3	chr11:47905400-47912400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:47906000-47910400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr11:47906000-47912200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:47906000-47912400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:47906200-47908200	Enhancers	Fetal Thymus	thymus
8	chr11:47906200-47908800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:47906200-47911800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:47906200-47912000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:47906200-47912200	Enhancers	Primary T cells from cord blood	blood
12	chr11:47906400-47908200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:47906600-47908000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr11:47906800-47908400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:47907000-47907600	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:47907000-47907600	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:47907000-47907600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr11:47907000-47907600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:47907000-47907600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:47907000-47907800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:47907000-47907800	Enhancers	Fetal Intestine Large	intestine
22	chr11:47907000-47907800	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:47907000-47907800	Enhancers	Thymus	Thymus
24	chr11:47907000-47907800	Enhancers	NHDF-Ad	bronchial
25	chr11:47907000-47907800	Enhancers	NHLF	lung
26	chr11:47907000-47908000	Enhancers	Primary B cells from peripheral blood	blood
27	chr11:47907000-47908000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:47907000-47908000	Enhancers	Adipose Nuclei	Adipose
29	chr11:47907000-47908000	Enhancers	Fetal Stomach	stomach
30	chr11:47907000-47908000	Enhancers	HepG2	liver
31	chr11:47907000-47908000	Enhancers	HSMMtube	muscle
32	chr11:47907000-47908200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:47907000-47908200	Enhancers	Fetal Intestine Small	intestine
34	chr11:47907200-47907600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:47907200-47907600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:47907200-47907800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:47907200-47907800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:47907200-47907800	Enhancers	Dnd41	blood
39	chr11:47907200-47908000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr11:47907400-47907800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:47907400-47907800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:47907400-47907800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr11:47907400-47907800	Flanking Active TSS	A549	lung
44	chr11:47907400-47907800	Flanking Active TSS	HUVEC	blood vessel
45	chr11:47907400-47907800	Enhancers	NH-A	brain
46	chr11:47907400-47907800	Flanking Active TSS	Osteobl	bone
47	chr11:47907400-47908000	Enhancers	Primary B cells from cord blood	blood
48	chr11:47907400-47908000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links