Variant report

Variant	rs73459178
Chromosome Location	chr9:72028026-72028027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:71650287..71651089-chr9:72027660..72028217,2	K562	blood:
2	chr9:71939359..71941808-chr9:72025736..72028094,2	MCF-7	breast:
3	chr9:72027288..72028201-chr9:72161004..72161637,2	MCF-7	breast:
4	chr9:71907137..71907714-chr9:72027328..72028069,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165060	Chromatin interaction
ENSG00000135063	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10046829	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10113929	1.00[ASN][1000 genomes]
rs10113949	1.00[ASN][1000 genomes]
rs10114017	1.00[ASN][1000 genomes]
rs10119925	1.00[ASN][1000 genomes]
rs10120442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10124296	1.00[ASN][1000 genomes]
rs11138512	1.00[ASN][1000 genomes]
rs11138569	1.00[ASN][1000 genomes]
rs12350476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1331971	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28386177	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28483200	1.00[ASN][1000 genomes]
rs28505427	1.00[ASN][1000 genomes]
rs4387043	1.00[ASN][1000 genomes]
rs4475564	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4535801	1.00[ASN][1000 genomes]
rs73459173	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73459180	1.00[ASN][1000 genomes]
rs73647208	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73647211	1.00[ASN][1000 genomes]
rs7870449	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7870559	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv893429	chr9:71961923-72047337	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893430	chr9:71968730-72036369	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv893431	chr9:72003036-72048098	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv8522	chr9:72009272-72034735	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2757340	chr9:72018246-72048098	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2759694	chr9:72018246-72048098	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72026800-72028400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:72027000-72028200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:72027000-72028400	Enhancers	Esophagus	oesophagus
4	chr9:72027000-72040000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:72027400-72028200	Enhancers	Fetal Lung	lung
6	chr9:72027600-72028200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr9:72027600-72028200	Active TSS	Adipose Nuclei	Adipose
8	chr9:72027600-72028200	Enhancers	Ovary	ovary
9	chr9:72027800-72028200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr9:72027800-72028200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:72027800-72028200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr9:72027800-72028200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:72027800-72028200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:72027800-72028200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:72027800-72028200	Active TSS	Brain Anterior Caudate	brain
16	chr9:72027800-72028200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
17	chr9:72027800-72028200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
18	chr9:72027800-72028200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:72027800-72028200	Enhancers	Psoas Muscle	Psoas
20	chr9:72027800-72028200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr9:72027800-72028200	Enhancers	Stomach Mucosa	stomach
22	chr9:72027800-72028200	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr9:72027800-72028200	Flanking Active TSS	NHLF	lung
24	chr9:72027800-72028400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:72027800-72028400	Enhancers	Brain Angular Gyrus	brain
26	chr9:72027800-72028400	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:72028000-72028200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr9:72028000-72028200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
29	chr9:72028000-72028200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:72028000-72028200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr9:72028000-72028200	Active TSS	HSMM	muscle
32	chr9:72028000-72028200	Active TSS	NHEK	skin
33	chr9:72028000-72028200	Enhancers	Osteobl	bone
34	chr9:72028000-72028400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:72028000-72028400	Enhancers	Lung	lung
36	chr9:72028000-72028400	Enhancers	Skeletal Muscle Female	skeletal muscle

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