Variant report

Variant	rs73460054
Chromosome Location	chr11:46967609-46967610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46862245..46864106-chr11:46967596..46969972,2	K562	blood:
2	chr11:46949796..46951912-chr11:46965834..46967718,2	K562	blood:
3	chr11:46961899..46965031-chr11:46965080..46968958,4	K562	blood:
4	chr11:46964914..46967746-chr11:46969560..46971972,2	K562	blood:
5	chr11:46960359..46964188-chr11:46967085..46970047,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12272266	0.84[AMR][1000 genomes]
rs12288724	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12290283	0.81[AMR][1000 genomes]
rs12291998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4084459	0.84[AMR][1000 genomes]
rs55924076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61040275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61516301	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7103266	0.84[AFR][1000 genomes]
rs7118724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125863	0.83[AFR][1000 genomes]
rs7127446	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460086	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7930293	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46958600-46973800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:46958800-46969400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46959000-46968000	Weak transcription	Spleen	Spleen
4	chr11:46959000-46968800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:46959000-46969000	Weak transcription	Brain Substantia Nigra	brain
6	chr11:46959000-46969200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:46959000-46969400	Weak transcription	Colonic Mucosa	Colon
8	chr11:46959000-46969400	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:46959000-46969400	Weak transcription	Pancreas	Pancrea
10	chr11:46959000-46969600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:46959000-46969600	Weak transcription	HSMMtube	muscle
12	chr11:46959000-46973400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:46959000-46973600	Weak transcription	HUVEC	blood vessel
14	chr11:46959000-46973800	Weak transcription	Primary T cells from cord blood	blood
15	chr11:46959000-46973800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:46959000-46973800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:46959000-46975600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:46959000-46977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:46959000-46980000	Weak transcription	Aorta	Aorta
20	chr11:46959000-46980000	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:46959000-46980000	Weak transcription	Ovary	ovary
22	chr11:46959000-46980200	Weak transcription	Primary B cells from cord blood	blood
23	chr11:46959000-46980200	Weak transcription	Gastric	stomach
24	chr11:46959000-46980200	Weak transcription	Lung	lung
25	chr11:46959000-46980200	Weak transcription	Thymus	Thymus
26	chr11:46959000-46981000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:46959000-46982200	Weak transcription	Fetal Kidney	kidney
28	chr11:46959000-46982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:46959000-46982600	Weak transcription	Fetal Thymus	thymus
30	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
31	chr11:46959200-46968200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:46959200-46968400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:46959200-46968400	Weak transcription	A549	lung
34	chr11:46959200-46968400	Weak transcription	NH-A	brain
35	chr11:46959200-46968600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:46959200-46968600	Weak transcription	HepG2	liver
37	chr11:46959200-46968600	Weak transcription	NHDF-Ad	bronchial
38	chr11:46959200-46968800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:46959200-46968800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:46959200-46968800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:46959200-46968800	Weak transcription	Adipose Nuclei	Adipose
42	chr11:46959200-46968800	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:46959200-46969600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:46959200-46969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:46959200-46969600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:46959200-46969600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:46959200-46969600	Weak transcription	NHLF	lung
48	chr11:46959200-46969800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:46959200-46969800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr11:46959200-46973400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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