Variant report

Variant	rs73460061
Chromosome Location	chr11:46974345-46974346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46968606..46971099-chr11:46973035..46974708,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10437654	1.00[AMR][1000 genomes]
rs11039039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276601	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281521	0.90[AFR][1000 genomes]
rs12289509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61255519	1.00[AMR][1000 genomes]
rs7122075	0.81[AFR][1000 genomes]
rs73460079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940797	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46959000-46975600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:46959000-46977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:46959000-46980000	Weak transcription	Aorta	Aorta
4	chr11:46959000-46980000	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:46959000-46980000	Weak transcription	Ovary	ovary
6	chr11:46959000-46980200	Weak transcription	Primary B cells from cord blood	blood
7	chr11:46959000-46980200	Weak transcription	Gastric	stomach
8	chr11:46959000-46980200	Weak transcription	Lung	lung
9	chr11:46959000-46980200	Weak transcription	Thymus	Thymus
10	chr11:46959000-46981000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:46959000-46982200	Weak transcription	Fetal Kidney	kidney
12	chr11:46959000-46982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:46959000-46982600	Weak transcription	Fetal Thymus	thymus
14	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
15	chr11:46959200-46980200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:46959200-46980200	Weak transcription	Dnd41	blood
17	chr11:46959200-46985000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:46959200-46990600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:46959200-46990600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:46959200-46993800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:46959600-46978800	Weak transcription	Fetal Brain Male	brain
22	chr11:46959600-46980000	Weak transcription	Fetal Brain Female	brain
23	chr11:46965200-46975200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:46965200-46975400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:46965200-46984600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:46967200-46978800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:46969000-46980200	Weak transcription	Fetal Lung	lung
28	chr11:46969400-46980000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:46969400-46980200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:46969800-46980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:46970000-46977000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:46970200-46980000	Weak transcription	Fetal Stomach	stomach
33	chr11:46970200-46983400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:46970400-46976800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:46970400-46980200	Weak transcription	HSMMtube	muscle
36	chr11:46970600-46976200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:46970600-46980000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:46970600-46980200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:46970600-46980200	Weak transcription	HSMM	muscle
40	chr11:46970600-46993200	Weak transcription	Small Intestine	intestine
41	chr11:46970800-46980600	Weak transcription	A549	lung
42	chr11:46971000-46975800	Weak transcription	Fetal Intestine Small	intestine
43	chr11:46971000-46980000	Weak transcription	Fetal Intestine Large	intestine
44	chr11:46971000-46992400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:46971200-46980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:46971600-46980200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:46971600-46995600	Weak transcription	Pancreas	Pancrea
48	chr11:46971600-47006600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:46973400-46974600	Genic enhancers	Hela-S3	cervix
50	chr11:46973400-46974800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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