Variant report

Variant	rs73460538
Chromosome Location	chr7:137697135-137697136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60284161	1.00[AMR][1000 genomes]
rs60319857	1.00[AMR][1000 genomes]
rs6974516	1.00[EUR][1000 genomes]
rs73155785	1.00[ASN][1000 genomes]
rs73447353	1.00[EUR][1000 genomes]
rs73447371	1.00[EUR][1000 genomes]
rs73460529	1.00[AMR][1000 genomes]
rs73460535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137687000-137700000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:137688000-137699600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:137688000-137703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:137693600-137700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:137694200-137699200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:137694200-137699800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:137696400-137697200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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