Variant report

Variant	rs73461343
Chromosome Location	chr15:76990478-76990479
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs56866829	0.87[AFR][1000 genomes]
rs59242281	1.00[AFR][1000 genomes]
rs59782694	0.87[AFR][1000 genomes]
rs7175175	1.00[AFR][1000 genomes]
rs73442176	0.87[AFR][1000 genomes]
rs73442185	0.87[AFR][1000 genomes]
rs73442188	0.87[AFR][1000 genomes]
rs73443752	1.00[AFR][1000 genomes]
rs73444261	0.87[AFR][1000 genomes]
rs73444264	0.87[AFR][1000 genomes]
rs73444270	1.00[AFR][1000 genomes]
rs73444271	1.00[AFR][1000 genomes]
rs73444275	1.00[AFR][1000 genomes]
rs73444284	0.87[AFR][1000 genomes]
rs73444286	0.87[AFR][1000 genomes]
rs73444294	0.87[AFR][1000 genomes]
rs73444302	0.87[AFR][1000 genomes]
rs73446211	0.87[AFR][1000 genomes]
rs73446219	0.87[AFR][1000 genomes]
rs73455126	0.87[AFR][1000 genomes]
rs73455146	0.87[AFR][1000 genomes]
rs73455153	0.87[AFR][1000 genomes]
rs73455162	0.87[AFR][1000 genomes]
rs73455170	0.87[AFR][1000 genomes]
rs73455385	1.00[AFR][1000 genomes]
rs73457048	0.87[AFR][1000 genomes]
rs73457057	0.87[AFR][1000 genomes]
rs73457073	0.87[AFR][1000 genomes]
rs73457079	0.87[AFR][1000 genomes]
rs73457154	1.00[AFR][1000 genomes]
rs73457168	1.00[AFR][1000 genomes]
rs73461319	1.00[AFR][1000 genomes]
rs73461327	1.00[AFR][1000 genomes]
rs73461329	1.00[AFR][1000 genomes]
rs73461332	1.00[AFR][1000 genomes]
rs73461338	1.00[AFR][1000 genomes]
rs8039673	0.87[AFR][1000 genomes]
rs8043089	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1042623	chr15:76863437-76999030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv904404	chr15:76869929-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
11	nsv904405	chr15:76869929-77047915	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
14	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1046858	chr15:76892097-77020971	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv542440	chr15:76892097-77020971	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1043066	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv542441	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv904409	chr15:76893186-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv904410	chr15:76893186-77047915	ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv904413	chr15:76923917-76995150	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76882200-76991400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:76902600-76992000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:76911400-76990800	Weak transcription	Placenta	Placenta
4	chr15:76936600-76991800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:76940200-76991800	Weak transcription	Left Ventricle	heart
6	chr15:76941400-76991600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:76942400-76991800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:76947400-76991600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:76947400-76991600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:76954200-76992000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:76957600-76991600	Weak transcription	Liver	Liver
12	chr15:76957800-76991200	Weak transcription	Primary T cells from cord blood	blood
13	chr15:76961200-76992000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:76972400-76991400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:76972600-76991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:76972600-76991800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:76973200-76991600	Weak transcription	Primary B cells from cord blood	blood
18	chr15:76973200-76991800	Weak transcription	Aorta	Aorta
19	chr15:76975000-76991800	Weak transcription	Thymus	Thymus
20	chr15:76975200-76991800	Weak transcription	Fetal Stomach	stomach
21	chr15:76976800-76991200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:76980200-76991800	Weak transcription	Fetal Intestine Small	intestine
23	chr15:76981800-76991800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:76982400-76991200	Weak transcription	Adipose Nuclei	Adipose
25	chr15:76982400-76991600	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:76984200-77008200	Weak transcription	Fetal Lung	lung
27	chr15:76984400-76991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:76986200-76991800	Weak transcription	Pancreas	Pancrea
29	chr15:76986400-76992000	Weak transcription	HepG2	liver
30	chr15:76986400-77002200	Weak transcription	Psoas Muscle	Psoas
31	chr15:76986600-76990800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:76987400-76991800	Weak transcription	Right Ventricle	heart
33	chr15:76988400-76991800	Weak transcription	Dnd41	blood
34	chr15:76989200-76990800	Weak transcription	Brain Anterior Caudate	brain
35	chr15:76989200-76991400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:76989200-76991800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:76989400-76990800	Weak transcription	Fetal Intestine Large	intestine
38	chr15:76989400-76991800	Weak transcription	Fetal Brain Female	brain
39	chr15:76989400-76991800	Weak transcription	GM12878-XiMat	blood
40	chr15:76989400-76992000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:76989600-76991200	Weak transcription	Fetal Thymus	thymus
42	chr15:76989600-76991400	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:76989600-76991600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:76989600-76991800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:76989600-77055800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:76989800-76991600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:76989800-76991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:76989800-76991600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:76989800-76991600	Weak transcription	Brain Hippocampus Middle	brain
50	chr15:76989800-76991600	Weak transcription	Brain Inferior Temporal Lobe	brain

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