Variant report

Variant	rs73461744
Chromosome Location	chr11:47535856-47535857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47535507..47539459-chr11:47585714..47589149,4	MCF-7	breast:
2	chr11:47534966..47537870-chr11:47543854..47546779,3	K562	blood:
3	chr11:47507562..47509697-chr11:47535519..47538073,2	K562	blood:

Variant related genes	Relation type
ENSG00000110536	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000213619	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs34580776	1.00[EUR][1000 genomes]
rs57175250	1.00[EUR][1000 genomes]
rs57830455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57878668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58841898	1.00[EUR][1000 genomes]
rs59409510	1.00[EUR][1000 genomes]
rs60582355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61654484	1.00[EUR][1000 genomes]
rs73451032	1.00[EUR][1000 genomes]
rs73451054	1.00[EUR][1000 genomes]
rs73453709	1.00[EUR][1000 genomes]
rs73453756	1.00[EUR][1000 genomes]
rs73459751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73459795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461779	1.00[EUR][1000 genomes]
rs73461796	1.00[EUR][1000 genomes]
rs73461797	1.00[EUR][1000 genomes]
rs73463785	1.00[EUR][1000 genomes]
rs73465695	1.00[EUR][1000 genomes]
rs73465700	1.00[EUR][1000 genomes]
rs73467344	1.00[EUR][1000 genomes]
rs73467345	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47510200-47536800	Weak transcription	Fetal Kidney	kidney
2	chr11:47522800-47536200	Weak transcription	Fetal Brain Female	brain
3	chr11:47523000-47536600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:47523000-47545600	Weak transcription	Dnd41	blood
5	chr11:47524800-47549600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:47528000-47538200	Enhancers	Osteobl	bone
7	chr11:47528400-47536400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:47528400-47536800	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:47528400-47544800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:47528800-47536600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:47528800-47541000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:47529200-47536400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:47529200-47536600	Weak transcription	Brain Germinal Matrix	brain
14	chr11:47530200-47543000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:47530800-47538000	Enhancers	NHDF-Ad	bronchial
16	chr11:47531000-47536000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:47531000-47536600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:47531200-47536000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:47531200-47536200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:47531200-47536400	Weak transcription	Brain Substantia Nigra	brain
21	chr11:47531200-47536600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:47531200-47536800	Weak transcription	Esophagus	oesophagus
23	chr11:47531200-47540400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr11:47531400-47536200	Weak transcription	Thymus	Thymus
25	chr11:47531400-47536400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:47531400-47536600	Weak transcription	Right Atrium	heart
27	chr11:47531600-47536400	Weak transcription	Colonic Mucosa	Colon
28	chr11:47531600-47542000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:47531800-47536400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:47531800-47536600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:47532000-47536000	Weak transcription	Brain Angular Gyrus	brain
32	chr11:47532000-47536200	Weak transcription	Brain Anterior Caudate	brain
33	chr11:47532000-47536200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:47532000-47536200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:47532000-47536600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:47532000-47536800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:47532000-47539800	Weak transcription	Fetal Intestine Large	intestine
38	chr11:47532200-47536000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr11:47532200-47536200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:47532200-47536400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:47532200-47536400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:47532200-47536600	Weak transcription	Gastric	stomach
43	chr11:47532200-47536600	Weak transcription	HMEC	breast
44	chr11:47532200-47536800	Weak transcription	Pancreas	Pancrea
45	chr11:47532400-47540600	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:47532600-47538200	Weak transcription	Fetal Intestine Small	intestine
47	chr11:47532600-47538600	Enhancers	NHLF	lung
48	chr11:47532600-47539600	Enhancers	Primary hematopoietic stem cells	blood
49	chr11:47532800-47538800	Enhancers	Primary B cells from cord blood	blood
50	chr11:47533200-47536000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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