Variant report

Variant	rs73462197
Chromosome Location	chr7:147627059-147627060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10239554	1.00[EUR][1000 genomes]
rs11975355	1.00[EUR][1000 genomes]
rs11977877	1.00[EUR][1000 genomes]
rs17170708	1.00[AMR][1000 genomes]
rs17170770	1.00[EUR][1000 genomes]
rs60522775	1.00[AMR][1000 genomes]
rs61428821	1.00[EUR][1000 genomes]
rs73464209	1.00[EUR][1000 genomes]
rs73464229	1.00[EUR][1000 genomes]
rs73464231	1.00[EUR][1000 genomes]
rs73466173	1.00[EUR][1000 genomes]
rs73468111	1.00[EUR][1000 genomes]
rs73468112	1.00[EUR][1000 genomes]
rs73468113	1.00[EUR][1000 genomes]
rs73468148	1.00[EUR][1000 genomes]
rs73468151	1.00[EUR][1000 genomes]
rs73470231	1.00[EUR][1000 genomes]
rs7776548	1.00[EUR][1000 genomes]
rs851667	1.00[EUR][1000 genomes]
rs851670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147627000-147627200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links