Variant report

Variant	rs73463518
Chromosome Location	chr6:80976017-80976018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11961345	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11961389	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961412	0.91[ASN][1000 genomes]
rs11961506	0.81[ASN][1000 genomes]
rs11967081	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968568	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28839510	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28888768	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35629704	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805862	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3805893	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3812123	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3812124	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3828750	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60566469	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61562479	0.85[EUR][1000 genomes]
rs6906392	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73463519	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73463522	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73463530	0.91[EUR][1000 genomes]
rs73463531	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73463536	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73463560	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73463601	0.85[EUR][1000 genomes]
rs73465567	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73465590	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73467507	0.91[ASN][1000 genomes]
rs73482038	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
3	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
4	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:80964800-81002600	Weak transcription	Liver	Liver
6	chr6:80967600-80976200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
8	chr6:80973600-80976600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:80974400-80976600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:80974400-80977200	Weak transcription	Fetal Lung	lung
11	chr6:80975200-80985000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:80976000-80977000	Strong transcription	HSMM	muscle

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