Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81015812..81017908-chr6:81024634..81027101,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11961345	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11968568	0.85[EUR][1000 genomes]
rs28839510	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28888768	0.91[EUR][1000 genomes]
rs35629704	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3805862	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3805893	0.85[EUR][1000 genomes]
rs61562479	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906392	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73463518	0.85[EUR][1000 genomes]
rs73463519	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73463522	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73463530	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73463531	0.85[EUR][1000 genomes]
rs73463536	0.82[EUR][1000 genomes]
rs73463560	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73463596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73465567	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73465590	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73467544	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81001200-81025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:81009200-81023200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:81010000-81020800	Weak transcription	Liver	Liver
5	chr6:81012800-81020600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:81013800-81028800	Weak transcription	HSMM	muscle
7	chr6:81014200-81020200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:81015000-81026400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:81015600-81036400	Weak transcription	Ovary	ovary
10	chr6:81015600-81037400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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