Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47613544..47615870-chr11:47616778..47619516,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56904157	1.00[EUR][1000 genomes]
rs56962998	1.00[EUR][1000 genomes]
rs57175250	1.00[EUR][1000 genomes]
rs57830455	1.00[EUR][1000 genomes]
rs57878668	1.00[EUR][1000 genomes]
rs58556689	1.00[EUR][1000 genomes]
rs58841898	1.00[EUR][1000 genomes]
rs59409510	1.00[EUR][1000 genomes]
rs60582355	1.00[EUR][1000 genomes]
rs61654484	1.00[EUR][1000 genomes]
rs73451032	1.00[EUR][1000 genomes]
rs73451054	1.00[EUR][1000 genomes]
rs73453756	1.00[EUR][1000 genomes]
rs73456963	1.00[EUR][1000 genomes]
rs73456966	1.00[EUR][1000 genomes]
rs73456971	1.00[EUR][1000 genomes]
rs73456978	1.00[EUR][1000 genomes]
rs73459751	1.00[EUR][1000 genomes]
rs73459799	1.00[EUR][1000 genomes]
rs73461723	1.00[EUR][1000 genomes]
rs73461734	1.00[EUR][1000 genomes]
rs73461744	1.00[EUR][1000 genomes]
rs73461779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461796	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73465695	1.00[EUR][1000 genomes]
rs73465700	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73467344	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73467345	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47607000-47632800	Weak transcription	Dnd41	blood
2	chr11:47616000-47628200	Weak transcription	Right Atrium	heart
3	chr11:47616400-47627000	Weak transcription	Pancreas	Pancrea
4	chr11:47616400-47628200	Weak transcription	HSMMtube	muscle
5	chr11:47616400-47628400	Weak transcription	Ovary	ovary
6	chr11:47616600-47621200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:47616600-47631400	Weak transcription	Spleen	Spleen
8	chr11:47616600-47632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:47616600-47632600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:47616800-47619200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:47616800-47620800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:47616800-47621200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:47616800-47624000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:47617000-47620800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:47617400-47620800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:47617400-47628200	Weak transcription	Right Ventricle	heart
17	chr11:47617600-47643200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search: