Variant report

Variant	rs73464281
Chromosome Location	chr7:147678643-147678644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11762995	0.80[EUR][1000 genomes]
rs11766463	0.80[EUR][1000 genomes]
rs11768090	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771401	0.80[EUR][1000 genomes]
rs1882687	1.00[ASN][1000 genomes]
rs1922886	0.91[ASN][1000 genomes]
rs1922887	1.00[ASN][1000 genomes]
rs2373288	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707555	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707577	1.00[ASN][1000 genomes]
rs2707578	1.00[ASN][1000 genomes]
rs2708275	1.00[ASN][1000 genomes]
rs2708276	1.00[ASN][1000 genomes]
rs2710086	1.00[ASN][1000 genomes]
rs73743659	1.00[ASN][1000 genomes]
rs73743660	1.00[ASN][1000 genomes]
rs7776548	0.94[AFR][1000 genomes]
rs7779536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780285	0.80[EUR][1000 genomes]
rs7793537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640247	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147678000-147679600	Enhancers	GM12878-XiMat	blood
2	chr7:147678400-147679000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:147678600-147678800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:147678600-147679000	Enhancers	Adipose Nuclei	Adipose

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