Variant report

Variant	rs73464989
Chromosome Location	chr7:147267973-147267974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10230213	0.83[EUR][1000 genomes]
rs17170610	0.89[EUR][1000 genomes]
rs28522874	0.89[EUR][1000 genomes]
rs28726668	0.89[EUR][1000 genomes]
rs4726887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581405	0.89[EUR][1000 genomes]
rs73461168	0.89[EUR][1000 genomes]
rs73462989	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73464972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73464975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791214	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147262200-147269000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:147264600-147268600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:147266600-147268000	Enhancers	HMEC	breast
4	chr7:147266800-147268000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:147267400-147271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:147267600-147268000	Enhancers	Fetal Kidney	kidney
7	chr7:147267800-147268000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:147267800-147268000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:147267800-147268000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr7:147267800-147268000	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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