Variant report

Variant	rs73465024
Chromosome Location	chr15:78913866-78913867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:78910468-78914011	SK-N-SH	brain:	n/a	n/a
2	CEBPB	chr15:78913804-78913992	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:78913820-78913870	HepG2	liver:	n/a
2	chr15:78913820-78913870	HCT-116	colon:	n/a
3	chr15:78913820-78913870	AG04450	lung:	fetal
4	chr15:78913820-78913870	AG04449	skin:	fetal
5	chr15:78913820-78913870	HRPEpiC	eye:	n/a
6	chr15:78913820-78913870	HMEC	breast:	n/a
7	chr15:78913820-78913870	ovcar-3	ovarian:	n/a
8	chr15:78913820-78913870	HUVEC	blood vessel:	n/a
9	chr15:78913820-78913870	BE2_C	brain:	n/a
10	chr15:78913820-78913870	HPAEpiC	pulmonary alveolar:	n/a
11	chr15:78913820-78913870	LNCaP	prostate:	n/a
12	chr15:78913820-78913870	HL-60	blood:	n/a
13	chr15:78913820-78913870	BJ	skin:	n/a
14	chr15:78913820-78913870	NB4	blood:	n/a
15	chr15:78913820-78913870	SKMC	muscle:	n/a
16	chr15:78913820-78913870	K562	blood:	n/a
17	chr15:78913820-78913870	HRCEpiC	kidney:	n/a
18	chr15:78913820-78913870	CMK	blood:	n/a
19	chr15:78913820-78913870	HCM	heart:	n/a
20	chr15:78913820-78913870	HEEpiC	esophagus:	n/a
21	chr15:78913820-78913870	NT2-D1	testis:	n/a
22	chr15:78913820-78913870	Hepatocyte	liver:	n/a
23	chr15:78913820-78913870	HEK293	kidney:	embryo
24	chr15:78913820-78913870	Caco-2	colon:	n/a
25	chr15:78913820-78913870	GM19239	blood:	n/a
26	chr15:78913820-78913870	U87	brain:	n/a
27	chr15:78913820-78913870	NHDF-neo	bronchial:	n/a
28	chr15:78913820-78913870	Hela-S3	cervix:	n/a
29	chr15:78913820-78913870	AoSMC	blood vessel:	n/a
30	chr15:78913820-78913870	HCPEpiC	choroid plexus:	n/a
31	chr15:78913820-78913870	PANC-1	pancreas:	n/a
32	chr15:78913820-78913870	SAEC	small airway:	n/a
33	chr15:78913820-78913870	GM12892	blood:	n/a
34	chr15:78913820-78913870	MCF10A-Er-Src	breast:	n/a
35	chr15:78913820-78913870	PrEC	prostate:	n/a
36	chr15:78913820-78913870	GM06990	blood:	n/a
37	chr15:78913820-78913870	NH-A	brain:	n/a
38	chr15:78913820-78913870	HRE	kidney:	n/a
39	chr15:78913820-78913870	ProgFib	skin:	n/a
40	chr15:78913820-78913870	GM12891	blood:	n/a
41	chr15:78913820-78913870	T-47D	breast:	n/a
42	chr15:78913820-78913870	AG09309	skin:	n/a
43	chr15:78913820-78913870	Jurkat	blood:	n/a
44	chr15:78913820-78913870	NHBE	bronchial:	n/a
45	chr15:78913820-78913870	SK-N-SH	brain:	n/a
46	chr15:78913820-78913870	HNPCEpiC	eye:	n/a
47	chr15:78913820-78913870	HAEpiC	amniotic membrane:	n/a
48	chr15:78913820-78913870	HCF	heart:	n/a
49	chr15:78913820-78913870	GM12878	blood:	n/a
50	chr15:78913820-78913870	IMR90	lung:	fetal

No data

Variant related genes	Relation type
ENSG00000259555	TF binding region
CHRNA3	TF binding region
ENSG00000259555	CpG island
CHRNA3	CpG island

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10519205	0.84[AFR][1000 genomes]
rs1472739	0.82[AFR][1000 genomes]
rs16969948	0.82[AFR][1000 genomes]
rs16969949	0.82[AFR][1000 genomes]
rs1875869	0.82[AFR][1000 genomes]
rs1875870	0.82[AFR][1000 genomes]
rs1878398	0.85[AFR][1000 genomes]
rs59180001	0.80[AFR][1000 genomes]
rs71581741	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7163480	0.91[AFR][1000 genomes]
rs7166003	0.82[AFR][1000 genomes]
rs7174019	0.91[AFR][1000 genomes]
rs7178897	0.82[AFR][1000 genomes]
rs7183983	0.91[AFR][1000 genomes]
rs73463074	0.82[AFR][1000 genomes]
rs73463077	0.82[AFR][1000 genomes]
rs73463082	0.82[AFR][1000 genomes]
rs73463090	0.82[AFR][1000 genomes]
rs73463095	0.89[AFR][1000 genomes]
rs8029939	0.91[AFR][1000 genomes]
rs8043214	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3395709	chr15:78911922-78914770	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78911000-78914200	Active TSS	Thymus	Thymus
2	chr15:78911400-78914600	Bivalent Enhancer	Placenta	Placenta
3	chr15:78912000-78914400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
4	chr15:78912800-78914000	Active TSS	Primary T cells from cord blood	blood
5	chr15:78913400-78914200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
6	chr15:78913600-78914800	Bivalent Enhancer	Dnd41	blood
7	chr15:78913800-78914400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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