Variant report

Variant	rs73465453
Chromosome Location	chr6:80521757-80521758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16891071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891073	0.89[AFR][1000 genomes]
rs4475294	1.00[AMR][1000 genomes]
rs57244257	1.00[AMR][1000 genomes]
rs59857395	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60487643	1.00[AMR][1000 genomes]
rs73463469	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463498	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465409	1.00[AMR][1000 genomes]
rs73465417	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465431	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465448	0.89[AFR][1000 genomes]
rs73465462	1.00[AMR][1000 genomes]
rs73465471	1.00[AMR][1000 genomes]
rs73465478	1.00[AMR][1000 genomes]
rs73465490	1.00[AMR][1000 genomes]
rs73465492	1.00[AMR][1000 genomes]
rs73465496	1.00[AMR][1000 genomes]
rs73467406	1.00[AMR][1000 genomes]
rs73467446	1.00[AMR][1000 genomes]
rs73467451	1.00[AMR][1000 genomes]
rs73467456	1.00[AMR][1000 genomes]
rs73467458	1.00[AMR][1000 genomes]
rs73467465	1.00[AMR][1000 genomes]
rs73467468	1.00[AMR][1000 genomes]
rs73467479	1.00[AMR][1000 genomes]
rs73469630	1.00[AMR][1000 genomes]
rs73471893	1.00[AMR][1000 genomes]
rs73474017	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1021143	chr6:80400195-80598163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80520400-80522800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:80520400-80523800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:80520600-80522000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:80520800-80521800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:80520800-80522000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:80520800-80522400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:80520800-80523400	Weak transcription	Fetal Heart	heart
8	chr6:80521000-80523400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:80521400-80521800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:80521400-80521800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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