Variant report

Variant	rs73467257
Chromosome Location	chr15:78978805-78978806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78977969..78980271-chr15:78982460..78985285,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11856346	0.91[AFR][1000 genomes]
rs11857565	1.00[AMR][1000 genomes]
rs11858869	1.00[AMR][1000 genomes]
rs56089816	1.00[AMR][1000 genomes]
rs58292347	1.00[AMR][1000 genomes]
rs60920122	1.00[AMR][1000 genomes]
rs7169877	0.86[AFR][1000 genomes]
rs73467212	1.00[AMR][1000 genomes]
rs73467215	1.00[AMR][1000 genomes]
rs73467249	1.00[AMR][1000 genomes]
rs73467256	0.99[AFR][1000 genomes]
rs73467283	0.86[AFR][1000 genomes]
rs8031641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974713	chr15:78945824-78996783	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv457209	chr15:78949127-78986805	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv471256	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv570203	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78972000-78980000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:78976800-78979200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:78976800-78979200	Enhancers	Fetal Thymus	thymus
4	chr15:78976800-78979600	Enhancers	Fetal Kidney	kidney
5	chr15:78977400-78979200	Enhancers	Adipose Nuclei	Adipose
6	chr15:78977400-78981200	Enhancers	Fetal Lung	lung
7	chr15:78977600-78979000	Enhancers	Fetal Muscle Leg	muscle
8	chr15:78977600-78979000	Enhancers	Left Ventricle	heart
9	chr15:78977800-78980200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:78978200-78979000	Enhancers	Thymus	Thymus
11	chr15:78978200-78979800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:78978200-78980200	Weak transcription	HMEC	breast
13	chr15:78978400-78983400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:78978400-78983600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:78978400-78984600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:78978400-78984600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:78978600-78983200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:78978600-78983200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:78978600-78983400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:78978600-78983600	Weak transcription	Esophagus	oesophagus
21	chr15:78978600-78984000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:78978600-78985400	Weak transcription	Fetal Brain Female	brain
23	chr15:78978800-78983200	Weak transcription	Spleen	Spleen
24	chr15:78978800-78983400	Weak transcription	Fetal Stomach	stomach
25	chr15:78978800-78983600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:78978800-78983600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:78978800-78983800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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