Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10226093	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10227836	0.90[EUR][1000 genomes]
rs10236799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241081	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10250801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10257780	0.90[EUR][1000 genomes]
rs10270437	0.90[EUR][1000 genomes]
rs10270778	0.90[EUR][1000 genomes]
rs10273095	0.90[EUR][1000 genomes]
rs10273493	1.00[EUR][1000 genomes]
rs10276268	0.82[EUR][1000 genomes]
rs10276274	0.90[EUR][1000 genomes]
rs10279557	1.00[EUR][1000 genomes]
rs11972972	1.00[EUR][1000 genomes]
rs11974390	0.90[EUR][1000 genomes]
rs11976838	1.00[EUR][1000 genomes]
rs11979926	0.82[EUR][1000 genomes]
rs28373395	0.90[EUR][1000 genomes]
rs28377968	0.90[EUR][1000 genomes]
rs28394241	0.90[EUR][1000 genomes]
rs28554472	0.90[EUR][1000 genomes]
rs28594409	0.90[EUR][1000 genomes]
rs28693625	0.90[EUR][1000 genomes]
rs57055307	1.00[EUR][1000 genomes]
rs58083908	1.00[EUR][1000 genomes]
rs58092267	1.00[EUR][1000 genomes]
rs58526779	0.90[EUR][1000 genomes]
rs58848818	1.00[EUR][1000 genomes]
rs60119393	1.00[EUR][1000 genomes]
rs60692572	1.00[EUR][1000 genomes]
rs6970931	1.00[EUR][1000 genomes]
rs73464297	0.90[EUR][1000 genomes]
rs73466110	0.90[EUR][1000 genomes]
rs73466115	1.00[EUR][1000 genomes]
rs73466190	1.00[EUR][1000 genomes]
rs73466195	1.00[EUR][1000 genomes]
rs73468119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147719200-147723800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:147723600-147724000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search: