Variant report

Variant	rs73469403
Chromosome Location	chr6:81071052-81071053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34036866	0.93[AFR][1000 genomes]
rs55836705	1.00[AFR][1000 genomes]
rs57466966	0.93[AFR][1000 genomes]
rs59547707	0.93[AFR][1000 genomes]
rs73469406	1.00[AFR][1000 genomes]
rs73469418	0.93[AFR][1000 genomes]
rs73469419	0.93[AFR][1000 genomes]
rs73469431	0.82[AFR][1000 genomes]
rs73469437	1.00[AFR][1000 genomes]
rs73469442	1.00[AFR][1000 genomes]
rs73469455	1.00[AFR][1000 genomes]
rs73469472	1.00[AFR][1000 genomes]
rs73469480	1.00[AFR][1000 genomes]
rs73469488	0.82[AFR][1000 genomes]
rs73469498	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81050400-81071200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:81053600-81073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:81058400-81071400	Weak transcription	Aorta	Aorta
5	chr6:81058400-81075800	Weak transcription	Psoas Muscle	Psoas
6	chr6:81065200-81072800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:81067600-81075800	Weak transcription	Ovary	ovary
8	chr6:81068200-81073000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:81069200-81073400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:81069200-81074000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:81069200-81079800	Weak transcription	Pancreas	Pancrea
12	chr6:81070200-81073400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:81071000-81071400	Enhancers	Brain Substantia Nigra	brain
14	chr6:81071000-81071600	Enhancers	Brain Anterior Caudate	brain
15	chr6:81071000-81071600	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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