Variant report

Variant	rs73469419
Chromosome Location	chr6:81076931-81076932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34036866	1.00[AFR][1000 genomes]
rs55836705	0.93[AFR][1000 genomes]
rs57466966	1.00[AFR][1000 genomes]
rs59547707	1.00[AFR][1000 genomes]
rs73467556	0.85[AFR][1000 genomes]
rs73469403	0.93[AFR][1000 genomes]
rs73469406	0.93[AFR][1000 genomes]
rs73469418	1.00[AFR][1000 genomes]
rs73469437	0.93[AFR][1000 genomes]
rs73469442	0.93[AFR][1000 genomes]
rs73469455	0.93[AFR][1000 genomes]
rs73469472	0.93[AFR][1000 genomes]
rs73469480	0.93[AFR][1000 genomes]
rs73469498	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81069200-81079800	Weak transcription	Pancreas	Pancrea
3	chr6:81074000-81077000	Weak transcription	Osteobl	bone
4	chr6:81075800-81077000	Enhancers	Psoas Muscle	Psoas
5	chr6:81076800-81078000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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