Variant report

Variant	rs73470602
Chromosome Location	chr11:57069480-57069481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:57069197-57069926	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
TNKS1BP1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56825823	0.87[AFR][1000 genomes]
rs57590159	0.87[AFR][1000 genomes]
rs59267531	0.87[AFR][1000 genomes]
rs60361446	1.00[AFR][1000 genomes]
rs61225787	0.92[AFR][1000 genomes]
rs61427216	0.87[AFR][1000 genomes]
rs73470586	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57052400-57078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57063600-57070400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:57063600-57070800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:57063600-57071200	Strong transcription	HSMM	muscle
5	chr11:57064000-57071400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:57064200-57071600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:57064200-57071600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:57064800-57071200	ZNF genes & repeats	Fetal Stomach	stomach
9	chr11:57064800-57071200	Strong transcription	Placenta Amnion	Placenta Amnion
10	chr11:57064800-57071600	Strong transcription	Osteobl	bone
11	chr11:57064800-57072000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:57065000-57070400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:57065000-57071000	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr11:57065000-57071800	Strong transcription	NHLF	lung
15	chr11:57065200-57069800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:57065200-57070800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:57065200-57070800	Strong transcription	HSMMtube	muscle
18	chr11:57065200-57071000	Strong transcription	NHEK	skin
19	chr11:57065400-57070600	Strong transcription	HMEC	breast
20	chr11:57065600-57069800	Strong transcription	NH-A	brain
21	chr11:57065600-57071200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:57065800-57071400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:57066000-57070800	Strong transcription	Brain Cingulate Gyrus	brain
24	chr11:57066200-57069600	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr11:57066200-57070800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:57066400-57069600	Strong transcription	Fetal Kidney	kidney
27	chr11:57066400-57070200	Strong transcription	Psoas Muscle	Psoas
28	chr11:57066400-57071400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr11:57066600-57069800	ZNF genes & repeats	Esophagus	oesophagus
30	chr11:57066600-57069800	Strong transcription	Small Intestine	intestine
31	chr11:57066600-57070600	Strong transcription	K562	blood
32	chr11:57066600-57071200	Strong transcription	Hela-S3	cervix
33	chr11:57066800-57070000	Strong transcription	Primary T cells from cord blood	blood
34	chr11:57066800-57070800	Strong transcription	HepG2	liver
35	chr11:57067000-57070000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:57067000-57071000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:57067000-57071000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr11:57067200-57069600	Strong transcription	HUVEC	blood vessel
39	chr11:57067200-57070200	Strong transcription	Brain Angular Gyrus	brain
40	chr11:57067200-57070800	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr11:57067200-57071000	Strong transcription	Brain Anterior Caudate	brain
42	chr11:57067200-57071000	Strong transcription	Brain Hippocampus Middle	brain
43	chr11:57067200-57071000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:57067200-57071600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:57067200-57078400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:57067400-57069800	Strong transcription	Fetal Thymus	thymus
47	chr11:57067400-57070800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:57067400-57078400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:57067400-57079000	Weak transcription	Primary B cells from cord blood	blood
50	chr11:57067600-57069600	Strong transcription	Brain Substantia Nigra	brain

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