Variant report

Variant	rs73472313
Chromosome Location	chr15:79236063-79236064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:79235057..79237029-chr15:79295283..79298269,2	K562	blood:
2	chr15:79164120..79166260-chr15:79235714..79238649,3	K562	blood:
3	chr15:79228914..79232769-chr15:79235901..79239047,4	MCF-7	breast:
4	chr15:79218946..79220515-chr15:79233949..79236109,2	MCF-7	breast:
5	chr15:79222345..79225252-chr15:79235201..79237549,2	K562	blood:
6	chr15:79164120..79166028-chr15:79235714..79238649,2	K562	blood:
7	chr15:79224751..79228848-chr15:79235939..79238870,4	MCF-7	breast:
8	chr15:79219205..79223895-chr15:79234790..79239038,6	MCF-7	breast:
9	chr15:79229734..79233307-chr15:79235000..79238757,6	MCF-7	breast:
10	chr15:79228459..79231609-chr15:79232688..79237314,4	K562	blood:
11	chr15:79223240..79225058-chr15:79235224..79237418,3	MCF-7	breast:
12	chr15:79228950..79233188-chr15:79235013..79237607,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction
ENSG00000058335	Chromatin interaction
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1550065	0.88[ASN][1000 genomes]
rs16970350	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1808757	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3825930	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4779161	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59238093	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61504829	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79215400-79236600	Weak transcription	Small Intestine	intestine
2	chr15:79219600-79236200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:79220600-79236200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:79220600-79236400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:79222400-79236400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:79223800-79236200	Weak transcription	Brain Angular Gyrus	brain
7	chr15:79224200-79236400	Weak transcription	Colonic Mucosa	Colon
8	chr15:79224400-79236600	Weak transcription	HMEC	breast
9	chr15:79224600-79236200	Weak transcription	Psoas Muscle	Psoas
10	chr15:79225600-79236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:79226600-79236200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:79227200-79236200	Weak transcription	Placenta	Placenta
13	chr15:79227400-79236400	Weak transcription	Aorta	Aorta
14	chr15:79227400-79236600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:79227600-79236200	Weak transcription	Right Ventricle	heart
16	chr15:79229800-79236200	Weak transcription	Esophagus	oesophagus
17	chr15:79230000-79236200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:79230200-79236200	Weak transcription	Pancreas	Pancrea
19	chr15:79230200-79236200	Weak transcription	Spleen	Spleen
20	chr15:79230200-79236400	Weak transcription	Ovary	ovary
21	chr15:79230200-79236600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:79231000-79236400	Weak transcription	Brain Substantia Nigra	brain
23	chr15:79231800-79236200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:79232000-79236800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:79232200-79236200	Weak transcription	Left Ventricle	heart
26	chr15:79232200-79236400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:79232400-79236200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:79232400-79236200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:79232400-79236400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:79232600-79236200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:79234200-79236800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr15:79234800-79236800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:79235000-79236400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:79235000-79237000	Flanking Active TSS	K562	blood
35	chr15:79235400-79236400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
36	chr15:79235400-79236400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:79235400-79236400	Active TSS	Brain Anterior Caudate	brain
38	chr15:79235400-79236400	Active TSS	Lung	lung
39	chr15:79235400-79236600	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr15:79235400-79237600	Active TSS	Fetal Intestine Small	intestine
41	chr15:79235400-79237600	Active TSS	GM12878-XiMat	blood
42	chr15:79235400-79238000	Active TSS	Brain Hippocampus Middle	brain
43	chr15:79235600-79236200	Active TSS	Adipose Nuclei	Adipose
44	chr15:79235600-79236400	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr15:79235600-79236400	Enhancers	Stomach Mucosa	stomach
46	chr15:79235600-79236800	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chr15:79235600-79237600	Active TSS	Gastric	stomach
48	chr15:79235800-79236200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:79235800-79237000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr15:79236000-79236200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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