Variant report

Variant	rs73474017
Chromosome Location	chr6:80659920-80659921
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80659127..80661422-chr6:80663652..80666036,2	K562	blood:
2	chr6:80657745..80660049-chr6:80716512..80719051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218582	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16891071	1.00[AMR][1000 genomes]
rs4475294	1.00[AMR][1000 genomes]
rs57244257	1.00[AMR][1000 genomes]
rs59857395	1.00[AMR][1000 genomes]
rs60487643	1.00[AMR][1000 genomes]
rs73463498	1.00[AMR][1000 genomes]
rs73465409	1.00[AMR][1000 genomes]
rs73465417	1.00[AMR][1000 genomes]
rs73465431	1.00[AMR][1000 genomes]
rs73465437	1.00[AMR][1000 genomes]
rs73465453	1.00[AMR][1000 genomes]
rs73465462	1.00[AMR][1000 genomes]
rs73465471	1.00[AMR][1000 genomes]
rs73465478	1.00[AMR][1000 genomes]
rs73465490	1.00[AMR][1000 genomes]
rs73465492	1.00[AMR][1000 genomes]
rs73465496	1.00[AMR][1000 genomes]
rs73467406	1.00[AMR][1000 genomes]
rs73467446	1.00[AMR][1000 genomes]
rs73467451	1.00[AMR][1000 genomes]
rs73467456	1.00[AMR][1000 genomes]
rs73467458	1.00[AMR][1000 genomes]
rs73467465	1.00[AMR][1000 genomes]
rs73467468	1.00[AMR][1000 genomes]
rs73467479	1.00[AMR][1000 genomes]
rs73469630	1.00[AMR][1000 genomes]
rs73471893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv933704	chr6:80657182-80674202	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80658000-80660600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:80658000-80664200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:80659400-80660000	Enhancers	Thymus	Thymus
4	chr6:80659400-80660000	Enhancers	Dnd41	blood
5	chr6:80659400-80660200	Enhancers	Fetal Thymus	thymus
6	chr6:80659400-80664600	Weak transcription	Gastric	stomach

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