Variant report

Variant	rs73474695
Chromosome Location	chr11:57174979-57174980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC43A3-1	chr11:57174427-57176222	NONHSAT021411

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12786765	0.83[AFR][1000 genomes]
rs73474661	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474667	1.00[AMR][1000 genomes]
rs73476723	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57167400-57188200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57168000-57176600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:57170200-57191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:57170400-57175000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:57170400-57176200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:57171000-57184800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:57171200-57175000	Weak transcription	Ovary	ovary
8	chr11:57171200-57175200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:57171800-57177200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:57172000-57175000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:57172000-57185000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:57172400-57175200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:57172600-57178000	Strong transcription	Primary T cells from cord blood	blood
14	chr11:57172600-57178000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:57172600-57178200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:57172600-57178200	Genic enhancers	GM12878-XiMat	blood
17	chr11:57172600-57180000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:57172600-57189800	Strong transcription	Dnd41	blood
19	chr11:57172800-57175000	Genic enhancers	Fetal Muscle Trunk	muscle
20	chr11:57172800-57175000	Enhancers	HUVEC	blood vessel
21	chr11:57172800-57175000	Genic enhancers	NHEK	skin
22	chr11:57172800-57175200	Enhancers	A549	lung
23	chr11:57172800-57175400	Genic enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:57172800-57175400	Genic enhancers	Fetal Muscle Leg	muscle
25	chr11:57172800-57178400	Strong transcription	Thymus	Thymus
26	chr11:57172800-57179200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:57172800-57185000	Weak transcription	NH-A	brain
28	chr11:57173000-57175000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:57173000-57175000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:57173000-57175000	Enhancers	Right Atrium	heart
31	chr11:57173000-57175000	Genic enhancers	K562	blood
32	chr11:57173000-57175400	Genic enhancers	Spleen	Spleen
33	chr11:57173000-57177400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:57173000-57178200	Strong transcription	Aorta	Aorta
35	chr11:57173000-57179200	Strong transcription	Fetal Stomach	stomach
36	chr11:57173000-57192800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:57173200-57175600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:57173200-57175600	Genic enhancers	Monocytes-CD14+_RO01746	blood
39	chr11:57173200-57176200	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:57173200-57178200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:57173200-57184400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:57173200-57191400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:57173200-57191400	Strong transcription	Fetal Thymus	thymus
44	chr11:57173400-57175000	Weak transcription	Fetal Kidney	kidney
45	chr11:57173400-57175400	Weak transcription	Right Ventricle	heart
46	chr11:57173400-57176600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:57173400-57182200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:57173400-57182800	Weak transcription	Small Intestine	intestine
49	chr11:57173600-57176800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:57173600-57177600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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