Variant report

Variant	rs73476046
Chromosome Location	chr6:80737884-80737885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80730895..80732973-chr6:80736170..80739701,4	K562	blood:
2	chr6:80733040..80735460-chr6:80736846..80739439,3	K562	blood:
3	chr6:80722394..80725312-chr6:80736793..80739743,2	MCF-7	breast:
4	chr6:80731473..80734540-chr6:80736888..80739701,3	K562	blood:
5	chr6:80713136..80715748-chr6:80737826..80739442,2	K562	blood:
6	chr6:80719003..80721359-chr6:80737643..80739358,2	K562	blood:

Variant related genes	Relation type
ENSG00000112742	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2230510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55824304	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55940239	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55981655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56004543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56919942	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57018426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57279047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57787325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57906390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59000209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61060954	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61354305	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61607353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73474059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474067	1.00[AMR][1000 genomes]
rs73474068	0.83[AMR][1000 genomes]
rs73474069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474082	0.83[AMR][1000 genomes]
rs73474087	1.00[AMR][1000 genomes]
rs73476022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73476044	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73476061	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73476065	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73476098	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73477920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73477923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73747991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv5370	chr6:80715351-80751740	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886306	chr6:80724666-80754346	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv886307	chr6:80724666-80765111	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv886308	chr6:80734870-80765111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80714800-80738800	Weak transcription	Small Intestine	intestine
2	chr6:80715000-80748000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:80715000-80752200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:80715000-80752400	Weak transcription	Placenta	Placenta
5	chr6:80715200-80739200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:80715200-80749600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:80715200-80752000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:80715200-80752200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:80715400-80742200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:80715400-80743200	Weak transcription	Brain Germinal Matrix	brain
11	chr6:80715400-80745400	Weak transcription	Fetal Lung	lung
12	chr6:80715400-80755000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:80715400-80756800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:80715600-80739200	Weak transcription	Fetal Stomach	stomach
15	chr6:80715600-80754400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:80715600-80763800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:80715800-80753600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:80715800-80753800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:80715800-80754400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:80716000-80739200	Weak transcription	NHEK	skin
21	chr6:80716000-80743600	Weak transcription	Fetal Heart	heart
22	chr6:80716200-80754600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:80716800-80753600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:80717400-80739200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:80721600-80760400	Weak transcription	Fetal Kidney	kidney
26	chr6:80721800-80742000	Weak transcription	A549	lung
27	chr6:80722200-80755400	Strong transcription	Dnd41	blood
28	chr6:80722400-80741400	Weak transcription	NHDF-Ad	bronchial
29	chr6:80723600-80752200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:80724000-80749600	Weak transcription	NHLF	lung
31	chr6:80724800-80741600	Weak transcription	Hela-S3	cervix
32	chr6:80727000-80738800	Weak transcription	GM12878-XiMat	blood
33	chr6:80727200-80755200	Weak transcription	Fetal Brain Female	brain
34	chr6:80727400-80738200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:80730200-80749000	Strong transcription	Fetal Thymus	thymus
36	chr6:80730200-80752600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:80730400-80748200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:80730400-80753600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:80730400-80753600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:80730600-80739200	Weak transcription	Fetal Intestine Large	intestine
41	chr6:80730600-80753600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:80731200-80740200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:80731400-80738000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:80732000-80738000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:80732000-80748400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:80732000-80749200	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:80732800-80738800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:80732800-80739200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:80732800-80739200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:80732800-80739200	Weak transcription	Fetal Muscle Leg	muscle

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