Variant report

Variant	rs73477985
Chromosome Location	chr6:80820870-80820871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80816163..80818419-chr6:80820042..80822251,2	K562	blood:
2	chr6:80819043..80821225-chr6:80823703..80826632,2	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11961506	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11961937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962441	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12110563	0.92[ASN][1000 genomes]
rs1324119	0.85[ASN][1000 genomes]
rs3749896	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805914	0.92[ASN][1000 genomes]
rs3805915	0.92[ASN][1000 genomes]
rs3805916	0.81[ASN][1000 genomes]
rs3805918	0.92[ASN][1000 genomes]
rs3805923	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3812148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59155686	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59460144	0.92[ASN][1000 genomes]
rs59516180	0.93[ASN][1000 genomes]
rs66486409	0.88[ASN][1000 genomes]
rs73477974	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73477975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73477981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479907	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479909	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73479950	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479953	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479968	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479980	0.92[ASN][1000 genomes]
rs73482011	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73482029	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73482038	0.85[AMR][1000 genomes]
rs742834	0.85[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80816800-80836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:80817000-80822000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:80817000-80822400	Weak transcription	Pancreas	Pancrea
4	chr6:80817000-80838200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
6	chr6:80817600-80821600	Weak transcription	HUVEC	blood vessel
7	chr6:80817600-80822000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:80817600-80822000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:80817600-80822000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:80817600-80822200	Weak transcription	Esophagus	oesophagus
11	chr6:80817600-80822400	Weak transcription	Left Ventricle	heart
12	chr6:80817600-80824600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:80817600-80825400	Weak transcription	Fetal Stomach	stomach
14	chr6:80817600-80828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:80817600-80832200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:80817600-80836000	Weak transcription	HSMM	muscle
17	chr6:80817600-80838200	Weak transcription	Aorta	Aorta
18	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:80817800-80821000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:80817800-80821000	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:80817800-80821000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:80817800-80822600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:80817800-80823400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:80817800-80823400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:80817800-80824200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:80817800-80824600	Weak transcription	Primary T cells from cord blood	blood
28	chr6:80817800-80825400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:80817800-80826200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:80817800-80827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:80817800-80828600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:80817800-80830600	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:80817800-80840600	Weak transcription	Ovary	ovary
34	chr6:80818000-80821000	Weak transcription	Fetal Intestine Small	intestine
35	chr6:80818000-80823400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:80818000-80838200	Weak transcription	Fetal Lung	lung
37	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:80818400-80826200	Weak transcription	Liver	Liver
40	chr6:80819400-80822400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:80819800-80821400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:80820000-80821400	Weak transcription	Fetal Thymus	thymus
43	chr6:80820400-80821000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:80820400-80821000	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:80820600-80821400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:80820800-80822800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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