Variant report

Variant	rs73479918
Chromosome Location	chr6:80839972-80839973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80815063..80818279-chr6:80837159..80840248,3	MCF-7	breast:
2	chr6:80718444..80720486-chr6:80838754..80840605,2	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11961506	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11961937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962441	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12110563	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1324119	0.85[ASN][1000 genomes]
rs3749896	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805914	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805915	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805916	0.81[ASN][1000 genomes]
rs3805918	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805923	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3812148	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59155686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59460144	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59516180	0.93[ASN][1000 genomes]
rs66486409	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73477974	0.84[AMR][1000 genomes]
rs73477975	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73477981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73477985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479907	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73479950	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479953	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479959	0.83[EUR][1000 genomes]
rs73479968	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479980	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73482011	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73482029	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73482038	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs742834	0.85[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
2	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:80817800-80840600	Weak transcription	Ovary	ovary
5	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:80822600-80840600	Weak transcription	Left Ventricle	heart
8	chr6:80824400-80843000	Weak transcription	Fetal Heart	heart
9	chr6:80827400-80842800	Weak transcription	Brain Anterior Caudate	brain
10	chr6:80829400-80844600	Weak transcription	Fetal Thymus	thymus
11	chr6:80829400-80852000	Weak transcription	Fetal Stomach	stomach
12	chr6:80832400-80844600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:80834400-80844200	Strong transcription	Primary T cells from cord blood	blood
14	chr6:80835400-80840800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:80835800-80842800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:80835800-80843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:80836200-80852800	Weak transcription	Right Ventricle	heart
18	chr6:80836400-80842800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:80836400-80855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:80836400-80863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:80836600-80840600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:80836600-80842200	Strong transcription	Primary B cells from cord blood	blood
24	chr6:80836600-80843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:80836600-80846800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:80836600-80852800	Weak transcription	Pancreas	Pancrea
27	chr6:80836800-80843400	Weak transcription	HepG2	liver
28	chr6:80836800-80843600	Weak transcription	Small Intestine	intestine
29	chr6:80836800-80846000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:80837000-80840200	Weak transcription	Adipose Nuclei	Adipose
31	chr6:80837000-80852600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:80837000-80853000	Weak transcription	Fetal Kidney	kidney
33	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
34	chr6:80837200-80841200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:80837200-80843200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:80837400-80840200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:80837400-80854200	Weak transcription	Brain Substantia Nigra	brain
38	chr6:80837600-80840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr6:80837600-80840600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:80837600-80853000	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:80838000-80840200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:80838000-80843400	Strong transcription	Dnd41	blood
43	chr6:80838000-80846800	Strong transcription	Liver	Liver
44	chr6:80838200-80840800	Strong transcription	GM12878-XiMat	blood
45	chr6:80838200-80841000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr6:80838200-80841200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:80838200-80841400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr6:80838200-80842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:80838400-80840000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:80838400-80840600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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