Variant report

Variant	rs73479950
Chromosome Location	chr6:80877307-80877308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80862264..80864483-chr6:80875848..80878156,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11961389	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11961506	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11961937	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11962441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11967081	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12110563	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324119	0.93[ASN][1000 genomes]
rs3749896	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805914	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805915	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805918	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812123	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3812124	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3812148	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3828750	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59155686	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59460144	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59516180	0.85[ASN][1000 genomes]
rs66486409	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73477975	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73477981	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73477985	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479907	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479909	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479918	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73479932	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73479953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479959	0.90[EUR][1000 genomes]
rs73479968	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479980	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482011	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482029	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73482038	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs742834	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524214	chr6:80853873-80892427	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:80839200-80889600	Weak transcription	Lung	lung
4	chr6:80841200-80895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:80842200-80914200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:80853800-80891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:80855200-80880200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:80855200-80907000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:80855200-80907200	Weak transcription	Ovary	ovary
10	chr6:80855400-80886200	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:80855400-80895400	Weak transcription	Fetal Stomach	stomach
12	chr6:80855800-80896000	Weak transcription	Aorta	Aorta
13	chr6:80856800-80878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:80858200-80877400	Weak transcription	Liver	Liver
15	chr6:80858400-80880200	Weak transcription	Dnd41	blood
16	chr6:80863200-80907200	Weak transcription	Psoas Muscle	Psoas
17	chr6:80868600-80891200	Weak transcription	Pancreas	Pancrea
18	chr6:80868800-80880200	Weak transcription	Fetal Heart	heart
19	chr6:80870200-80880400	Weak transcription	Gastric	stomach
20	chr6:80870200-80884200	Weak transcription	Left Ventricle	heart
21	chr6:80870800-80886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:80871400-80895800	Weak transcription	Right Ventricle	heart
23	chr6:80872000-80883000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:80873800-80880000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:80873800-80880200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:80873800-80883000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:80873800-80883000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:80874000-80877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:80874000-80878000	Weak transcription	Small Intestine	intestine
30	chr6:80874000-80879200	Weak transcription	Fetal Thymus	thymus
31	chr6:80874000-80879400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:80874000-80881600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:80874000-80882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:80874000-80884800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:80874000-80891000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:80874000-80894000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:80874200-80877400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:80874200-80877800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:80874200-80884400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:80874200-80887600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:80874200-80888400	Weak transcription	Fetal Intestine Large	intestine
42	chr6:80874200-80899200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:80874600-80886200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:80874800-80877600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:80875000-80881800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:80875000-80891200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:80875200-80883000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:80875200-80884600	Weak transcription	Primary T cells from cord blood	blood
49	chr6:80875200-80886400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:80875200-80893200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links