Variant report

Variant	rs73483221
Chromosome Location	chr11:59896028-59896029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35033981	1.00[AMR][1000 genomes]
rs59036106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59586266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59879400-59897600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:59892400-59897800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:59892600-59899200	Weak transcription	Fetal Intestine Large	intestine
4	chr11:59892800-59896400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:59893200-59897800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:59893800-59899400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:59894000-59897400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:59894400-59896200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:59894800-59897200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:59895000-59899200	Weak transcription	Ovary	ovary
11	chr11:59895400-59897400	Weak transcription	Stomach Mucosa	stomach
12	chr11:59895400-59907400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:59895800-59897400	Weak transcription	K562	blood
14	chr11:59895800-59899200	Weak transcription	Fetal Intestine Small	intestine
15	chr11:59896000-59897600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:59896000-59898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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