Variant report

Variant	rs73485360
Chromosome Location	chr11:60019547-60019548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59590107..59591267-chr11:60018622..60019728,5	MCF-7	breast:
2	chr11:59590161..59591119-chr11:60018628..60019571,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1426252	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081546	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2243987	0.81[ASN][1000 genomes]
rs2433240	0.81[ASN][1000 genomes]
rs581818	0.81[ASN][1000 genomes]
rs582407	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs585540	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs587634	0.81[ASN][1000 genomes]
rs590351	0.81[ASN][1000 genomes]
rs592496	0.81[ASN][1000 genomes]
rs594414	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs595014	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs596788	0.81[ASN][1000 genomes]
rs598862	0.81[ASN][1000 genomes]
rs607639	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs613548	0.90[ASN][1000 genomes]
rs613629	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs615405	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs624233	0.81[ASN][1000 genomes]
rs625025	0.81[ASN][1000 genomes]
rs636988	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs638872	0.81[ASN][1000 genomes]
rs641051	0.81[ASN][1000 genomes]
rs641829	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs642426	0.81[ASN][1000 genomes]
rs646924	0.81[ASN][1000 genomes]
rs649234	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650777	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650853	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650926	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs653285	0.81[ASN][1000 genomes]
rs654443	0.81[ASN][1000 genomes]
rs661376	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662674	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs668095	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs668134	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs670925	0.81[ASN][1000 genomes]
rs672218	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs674971	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs675316	0.80[ASN][1000 genomes]
rs675452	0.90[ASN][1000 genomes]
rs680699	0.81[ASN][1000 genomes]
rs682739	0.81[ASN][1000 genomes]
rs684977	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60018200-60022000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60018800-60020400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr11:60018800-60021200	Enhancers	HUVEC	blood vessel
4	chr11:60019000-60020000	Enhancers	Ovary	ovary
5	chr11:60019000-60021000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:60019000-60021200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:60019200-60020000	Enhancers	GM12878-XiMat	blood
8	chr11:60019200-60021200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:60019400-60020800	Enhancers	Primary B cells from cord blood	blood
10	chr11:60019400-60021200	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links