Variant report

Variant	rs73490019
Chromosome Location	chr13:51208293-51208294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51203846..51206434-chr13:51207339..51209501,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55735210	1.00[EUR][1000 genomes]
rs56071165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57622309	1.00[EUR][1000 genomes]
rs57862685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58716859	1.00[AMR][1000 genomes]
rs59628841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59955074	1.00[AMR][1000 genomes]
rs60219042	1.00[EUR][1000 genomes]
rs61510431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61619820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485666	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485690	1.00[AMR][1000 genomes]
rs73487855	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490042	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490056	1.00[AMR][1000 genomes]
rs73490060	1.00[AMR][1000 genomes]
rs73492016	1.00[AMR][1000 genomes]
rs73492050	1.00[AMR][1000 genomes]
rs73492077	1.00[AMR][1000 genomes]
rs73492079	1.00[AMR][1000 genomes]
rs73495648	1.00[AMR][1000 genomes]
rs73497575	1.00[AMR][1000 genomes]
rs74077867	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7992787	1.00[EUR][1000 genomes]
rs7995277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591342	1.00[EUR][1000 genomes]
rs9591344	1.00[EUR][1000 genomes]
rs9596316	1.00[EUR][1000 genomes]
rs9596323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045733	chr13:51187575-51217464	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51191600-51210800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:51201400-51209400	Weak transcription	Adipose Nuclei	Adipose
3	chr13:51204800-51208800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr13:51204800-51209800	Weak transcription	Fetal Lung	lung
5	chr13:51205600-51209600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:51205600-51209800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:51205800-51209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:51206200-51211200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:51207400-51208800	Enhancers	Fetal Thymus	thymus
10	chr13:51207600-51210000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr13:51207600-51211200	Enhancers	Primary B cells from cord blood	blood
12	chr13:51207800-51210400	Weak transcription	Dnd41	blood

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