Variant report

Variant	rs73490042
Chromosome Location	chr13:51227886-51227887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56071165	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57862685	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58716859	1.00[AMR][1000 genomes]
rs59628841	1.00[AMR][1000 genomes]
rs59955074	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61510431	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61619820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485666	1.00[AMR][1000 genomes]
rs73485690	1.00[AMR][1000 genomes]
rs73487855	1.00[AMR][1000 genomes]
rs73487899	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490013	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492016	1.00[AMR][1000 genomes]
rs73492050	1.00[AMR][1000 genomes]
rs73492077	1.00[AMR][1000 genomes]
rs73492079	1.00[AMR][1000 genomes]
rs73495648	1.00[AMR][1000 genomes]
rs73497575	1.00[AMR][1000 genomes]
rs74077867	1.00[AMR][1000 genomes]
rs74078134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7995277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996975	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51220400-51239400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:51226400-51232400	Weak transcription	Psoas Muscle	Psoas
3	chr13:51227400-51231000	Weak transcription	Thymus	Thymus
4	chr13:51227600-51230600	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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