Variant report

Variant	rs73490056
Chromosome Location	chr13:51242987-51242988
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56071165	1.00[AMR][1000 genomes]
rs57862685	1.00[AMR][1000 genomes]
rs58716859	1.00[AMR][1000 genomes]
rs59628841	1.00[AMR][1000 genomes]
rs59955074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61510431	1.00[AMR][1000 genomes]
rs61619820	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485666	1.00[AMR][1000 genomes]
rs73485690	1.00[AMR][1000 genomes]
rs73487855	1.00[AMR][1000 genomes]
rs73487899	1.00[AMR][1000 genomes]
rs73490013	1.00[AMR][1000 genomes]
rs73490019	1.00[AMR][1000 genomes]
rs73490042	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492016	1.00[AMR][1000 genomes]
rs73492050	1.00[AMR][1000 genomes]
rs73492077	1.00[AMR][1000 genomes]
rs73492079	1.00[AMR][1000 genomes]
rs73495648	1.00[AMR][1000 genomes]
rs73497575	1.00[AMR][1000 genomes]
rs73497601	1.00[AMR][1000 genomes]
rs74077867	1.00[AMR][1000 genomes]
rs74078134	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7995277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7996975	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51237400-51245200	Weak transcription	Osteobl	bone
2	chr13:51241000-51245600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:51241400-51245200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:51241400-51245600	Enhancers	Fetal Thymus	thymus
5	chr13:51241400-51249800	Weak transcription	Right Ventricle	heart
6	chr13:51241600-51244800	Enhancers	Thymus	Thymus
7	chr13:51242000-51243400	Enhancers	Brain Hippocampus Middle	brain
8	chr13:51242000-51244200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:51242000-51244200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr13:51242000-51245800	Enhancers	Fetal Muscle Leg	muscle
11	chr13:51242200-51243400	Enhancers	Brain Cingulate Gyrus	brain
12	chr13:51242200-51243600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr13:51242200-51243800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr13:51242600-51243000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr13:51242800-51243200	Enhancers	Primary B cells from cord blood	blood
16	chr13:51242800-51243200	Enhancers	Brain Anterior Caudate	brain
17	chr13:51242800-51243200	Enhancers	Brain Substantia Nigra	brain
18	chr13:51242800-51243400	Enhancers	Fetal Brain Male	brain
19	chr13:51242800-51244200	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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