Variant report

Variant	rs73490973
Chromosome Location	chr11:59664340-59664341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59035014	1.00[AMR][1000 genomes]
rs66980105	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490905	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490921	1.00[AMR][1000 genomes]
rs73490963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493107	1.00[AMR][1000 genomes]
rs73493111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975330	chr11:59663142-59666889	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv334	chr11:59663800-59709104	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59660000-59666400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:59660000-59667000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:59660000-59668800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:59662800-59668200	Weak transcription	NHEK	skin
5	chr11:59662800-59668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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